Matches in SemOpenAlex for { <https://semopenalex.org/work/W2098571862> ?p ?o ?g. }
- W2098571862 abstract "To understand an RNA sequence's mechanism of action, the structure must be known. Furthermore, target RNA structure is an important consideration in the design of small interfering RNAs and antisense DNA oligonucleotides. RNA secondary structure prediction, using thermodynamics, can be used to develop hypotheses about the structure of an RNA sequence.RNAstructure is a software package for RNA secondary structure prediction and analysis. It uses thermodynamics and utilizes the most recent set of nearest neighbor parameters from the Turner group. It includes methods for secondary structure prediction (using several algorithms), prediction of base pair probabilities, bimolecular structure prediction, and prediction of a structure common to two sequences. This contribution describes new extensions to the package, including a library of C++ classes for incorporation into other programs, a user-friendly graphical user interface written in JAVA, and new Unix-style text interfaces. The original graphical user interface for Microsoft Windows is still maintained.The extensions to RNAstructure serve to make RNA secondary structure prediction user-friendly. The package is available for download from the Mathews lab homepage at http://rna.urmc.rochester.edu/RNAstructure.html." @default.
- W2098571862 created "2016-06-24" @default.
- W2098571862 creator A5002272329 @default.
- W2098571862 creator A5037327686 @default.
- W2098571862 date "2010-03-15" @default.
- W2098571862 modified "2023-10-10" @default.
- W2098571862 title "RNAstructure: software for RNA secondary structure prediction and analysis" @default.
- W2098571862 cites W1542426682 @default.
- W2098571862 cites W1548666616 @default.
- W2098571862 cites W1559047570 @default.
- W2098571862 cites W1622263187 @default.
- W2098571862 cites W1860906034 @default.
- W2098571862 cites W1861164398 @default.
- W2098571862 cites W1965077482 @default.
- W2098571862 cites W1966868626 @default.
- W2098571862 cites W1972716345 @default.
- W2098571862 cites W1975390562 @default.
- W2098571862 cites W1978635942 @default.
- W2098571862 cites W1980410097 @default.
- W2098571862 cites W1982004051 @default.
- W2098571862 cites W1987824602 @default.
- W2098571862 cites W1988380385 @default.
- W2098571862 cites W1988564621 @default.
- W2098571862 cites W1992361112 @default.
- W2098571862 cites W1994852979 @default.
- W2098571862 cites W1994958179 @default.
- W2098571862 cites W1995658481 @default.
- W2098571862 cites W2001876475 @default.
- W2098571862 cites W2002763632 @default.
- W2098571862 cites W2004945910 @default.
- W2098571862 cites W2006065113 @default.
- W2098571862 cites W2009095852 @default.
- W2098571862 cites W2009215595 @default.
- W2098571862 cites W2009736453 @default.
- W2098571862 cites W2009818318 @default.
- W2098571862 cites W2010759469 @default.
- W2098571862 cites W2013557764 @default.
- W2098571862 cites W2013989449 @default.
- W2098571862 cites W2017313617 @default.
- W2098571862 cites W2018216725 @default.
- W2098571862 cites W2022370961 @default.
- W2098571862 cites W2024680067 @default.
- W2098571862 cites W2025763720 @default.
- W2098571862 cites W2032136448 @default.
- W2098571862 cites W2035212600 @default.
- W2098571862 cites W2042932259 @default.
- W2098571862 cites W2049224532 @default.
- W2098571862 cites W2050774163 @default.
- W2098571862 cites W2051713039 @default.
- W2098571862 cites W2053984304 @default.
- W2098571862 cites W2054697783 @default.
- W2098571862 cites W2064761585 @default.
- W2098571862 cites W2065797343 @default.
- W2098571862 cites W2067887261 @default.
- W2098571862 cites W2068205681 @default.
- W2098571862 cites W2069165607 @default.
- W2098571862 cites W2071883352 @default.
- W2098571862 cites W2077428014 @default.
- W2098571862 cites W2077433900 @default.
- W2098571862 cites W2082217694 @default.
- W2098571862 cites W2088046080 @default.
- W2098571862 cites W2091708465 @default.
- W2098571862 cites W2092015682 @default.
- W2098571862 cites W2093319550 @default.
- W2098571862 cites W2093376867 @default.
- W2098571862 cites W2093753102 @default.
- W2098571862 cites W2096253994 @default.
- W2098571862 cites W2101497682 @default.
- W2098571862 cites W2105950741 @default.
- W2098571862 cites W2113816707 @default.
- W2098571862 cites W2115215562 @default.
- W2098571862 cites W2116791963 @default.
- W2098571862 cites W2117431427 @default.
- W2098571862 cites W2125181285 @default.
- W2098571862 cites W2125882871 @default.
- W2098571862 cites W2126244322 @default.
- W2098571862 cites W2129359130 @default.
- W2098571862 cites W2133279153 @default.
- W2098571862 cites W2134298234 @default.
- W2098571862 cites W2134653938 @default.
- W2098571862 cites W2136654689 @default.
- W2098571862 cites W2140302584 @default.
- W2098571862 cites W2141573080 @default.
- W2098571862 cites W2146241343 @default.
- W2098571862 cites W2149681483 @default.
- W2098571862 cites W2150764138 @default.
- W2098571862 cites W2153140501 @default.
- W2098571862 cites W2155318580 @default.
- W2098571862 cites W2159548583 @default.
- W2098571862 cites W2164604555 @default.
- W2098571862 cites W2165639228 @default.
- W2098571862 cites W2166989126 @default.
- W2098571862 cites W2170030776 @default.
- W2098571862 cites W2410266117 @default.
- W2098571862 cites W2411904248 @default.
- W2098571862 doi "https://doi.org/10.1186/1471-2105-11-129" @default.
- W2098571862 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/2984261" @default.
- W2098571862 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/20230624" @default.
- W2098571862 hasPublicationYear "2010" @default.
- W2098571862 type Work @default.