FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W2100237209> ?p ?o ?g. }

• W2100237209 endingPage "305" @default.
• W2100237209 startingPage "294" @default.
• W2100237209 abstract "We developed a novel approach for de novo genome assembly using only sequence data from high-throughput short read sequencing technologies. By combining data generated from 454 Life Sciences (Roche) and Illumina (formerly known as Solexa sequencing) sequencing platforms, we reliably assembled genomes into large scaffolds at a fraction of the traditional cost and without use of a reference sequence. We applied this method to two isolates of the phytopathogenic bacteria Pseudomonas syringae. Sequencing and reassembly of the well-studied tomato and Arabidopsis pathogen, Pto(DC3000), facilitated development and testing of our method. Sequencing of a distantly related rice pathogen, Por(1_)(6), demonstrated our method's efficacy for de novo assembly of novel genomes. Our assembly of Por(1_6) yielded an N50 scaffold size of 531,821 bp with >75% of the predicted genome covered by scaffolds over 100,000 bp. One of the critical phenotypic differences between strains of P. syringae is the range of plant hosts they infect. This is largely determined by their complement of type III effector proteins. The genome of Por(1_6) is the first sequenced for a P. syringae isolate that is a pathogen of monocots, and, as might be predicted, its complement of type III effectors differs substantially from the previously sequenced isolates of this species. The genome of Por(1_6) helps to define an expansion of the P. syringae pan-genome, a corresponding contraction of the core genome, and a further diversification of the type III effector complement for this important plant pathogen species." @default.
• W2100237209 created "2016-06-24" @default.
• W2100237209 creator A5000714077 @default.
• W2100237209 creator A5067145615 @default.
• W2100237209 creator A5077864353 @default.
• W2100237209 creator A5081588900 @default.
• W2100237209 creator A5082498150 @default.
• W2100237209 creator A5091112024 @default.
• W2100237209 date "2008-11-17" @default.
• W2100237209 modified "2023-10-10" @default.
• W2100237209 title "De novo assembly using low-coverage short read sequence data from the rice pathogen <i>Pseudomonas syringae</i> pv. <i>oryzae</i>" @default.
• W2100237209 cites W1760848733 @default.
• W2100237209 cites W1834463255 @default.
• W2100237209 cites W1841715584 @default.
• W2100237209 cites W1864675704 @default.
• W2100237209 cites W1978164115 @default.
• W2100237209 cites W1978173716 @default.
• W2100237209 cites W1982768456 @default.
• W2100237209 cites W1988807068 @default.
• W2100237209 cites W1996808308 @default.
• W2100237209 cites W2002875415 @default.
• W2100237209 cites W2004791359 @default.
• W2100237209 cites W2011586678 @default.
• W2100237209 cites W2023911006 @default.
• W2100237209 cites W2023975285 @default.
• W2100237209 cites W2024430493 @default.
• W2100237209 cites W2029189389 @default.
• W2100237209 cites W2040210770 @default.
• W2100237209 cites W2041211295 @default.
• W2100237209 cites W2063985242 @default.
• W2100237209 cites W2075827101 @default.
• W2100237209 cites W2082195055 @default.
• W2100237209 cites W2092784580 @default.
• W2100237209 cites W2097429168 @default.
• W2100237209 cites W2102906512 @default.
• W2100237209 cites W2105199251 @default.
• W2100237209 cites W2116160740 @default.
• W2100237209 cites W2117858546 @default.
• W2100237209 cites W2119107895 @default.
• W2100237209 cites W2121695290 @default.
• W2100237209 cites W2127115092 @default.
• W2100237209 cites W2127651281 @default.
• W2100237209 cites W2128114769 @default.
• W2100237209 cites W2130468058 @default.
• W2100237209 cites W2136145671 @default.
• W2100237209 cites W2136521365 @default.
• W2100237209 cites W2137509018 @default.
• W2100237209 cites W2139760555 @default.
• W2100237209 cites W2141324508 @default.
• W2100237209 cites W2142298292 @default.
• W2100237209 cites W2144251138 @default.
• W2100237209 cites W2146699269 @default.
• W2100237209 cites W2151017710 @default.
• W2100237209 cites W2155004366 @default.
• W2100237209 cites W2159998739 @default.
• W2100237209 cites W2160969485 @default.
• W2100237209 cites W2161046065 @default.
• W2100237209 cites W2162096338 @default.
• W2100237209 cites W2162515800 @default.
• W2100237209 cites W2164631357 @default.
• W2100237209 cites W2166666507 @default.
• W2100237209 cites W2167120169 @default.
• W2100237209 cites W2171475724 @default.
• W2100237209 cites W2205425490 @default.
• W2100237209 cites W2616754551 @default.
• W2100237209 doi "https://doi.org/10.1101/gr.083311.108" @default.
• W2100237209 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/2652211" @default.
• W2100237209 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/19015323" @default.
• W2100237209 hasPublicationYear "2008" @default.
• W2100237209 type Work @default.
• W2100237209 sameAs 2100237209 @default.
• W2100237209 citedByCount "145" @default.
• W2100237209 countsByYear W21002372092012 @default.
• W2100237209 countsByYear W21002372092013 @default.
• W2100237209 countsByYear W21002372092014 @default.
• W2100237209 countsByYear W21002372092015 @default.
• W2100237209 countsByYear W21002372092016 @default.
• W2100237209 countsByYear W21002372092017 @default.
• W2100237209 countsByYear W21002372092018 @default.
• W2100237209 countsByYear W21002372092019 @default.
• W2100237209 countsByYear W21002372092020 @default.
• W2100237209 countsByYear W21002372092021 @default.
• W2100237209 countsByYear W21002372092023 @default.
• W2100237209 crossrefType "journal-article" @default.
• W2100237209 hasAuthorship W2100237209A5000714077 @default.
• W2100237209 hasAuthorship W2100237209A5067145615 @default.
• W2100237209 hasAuthorship W2100237209A5077864353 @default.
• W2100237209 hasAuthorship W2100237209A5081588900 @default.
• W2100237209 hasAuthorship W2100237209A5082498150 @default.
• W2100237209 hasAuthorship W2100237209A5091112024 @default.
• W2100237209 hasBestOaLocation W21002372091 @default.
• W2100237209 hasConcept C104317684 @default.
• W2100237209 hasConcept C106337198 @default.
• W2100237209 hasConcept C132917006 @default.
• W2100237209 hasConcept C141231307 @default.
• W2100237209 hasConcept C150194340 @default.
• W2100237209 hasConcept C162317418 @default.
• W2100237209 hasConcept C189206191 @default.

• next