FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W2103412835> ?p ?o ?g. }

• W2103412835 endingPage "1598" @default.
• W2103412835 startingPage "1587" @default.
• W2103412835 abstract "Full genome data sets are currently being explored on a regular basis to infer phylogenetic trees, but there are often discordances among the trees produced by different genes. An important goal in phylogenomics is to identify which individual gene and species produce the same phylogenetic tree and are thus likely to share the same evolutionary history. On the other hand, it is also essential to identify which genes and species produce discordant topologies and therefore evolve in a different way or represent noise in the data. The latter are outlier genes or species and they can provide a wealth of information on potentially interesting biological processes, such as incomplete lineage sorting, hybridization, and horizontal gene transfers. Here, we propose a new method to explore the genomic tree space and detect outlier genes and species based on multiple co-inertia analysis (MCOA), which efficiently captures and compares the similarities in the phylogenetic topologies produced by individual genes. Our method allows the rapid identification of outlier genes and species by extracting the similarities and discrepancies, in terms of the pairwise distances, between all the species in all the trees, simultaneously. This is achieved by using MCOA, which finds successive decomposition axes from individual ordinations (i.e., derived from distance matrices) that maximize a covariance function. The method is freely available as a set of R functions. The source code and tutorial can be found online at http://phylomcoa.cgenomics.org." @default.
• W2103412835 created "2016-06-24" @default.
• W2103412835 creator A5017621384 @default.
• W2103412835 creator A5051696956 @default.
• W2103412835 creator A5063037795 @default.
• W2103412835 date "2012-01-03" @default.
• W2103412835 modified "2023-10-18" @default.
• W2103412835 title "Phylo-MCOA: A Fast and Efficient Method to Detect Outlier Genes and Species in Phylogenomics Using Multiple Co-inertia Analysis" @default.
• W2103412835 cites W2012204817 @default.
• W2103412835 cites W2032545157 @default.
• W2103412835 cites W2055298722 @default.
• W2103412835 cites W2055764798 @default.
• W2103412835 cites W2065950981 @default.
• W2103412835 cites W2076163683 @default.
• W2103412835 cites W2082246635 @default.
• W2103412835 cites W2089673708 @default.
• W2103412835 cites W2095388850 @default.
• W2103412835 cites W2097117583 @default.
• W2103412835 cites W2099355889 @default.
• W2103412835 cites W2102665886 @default.
• W2103412835 cites W2105764044 @default.
• W2103412835 cites W2106446203 @default.
• W2103412835 cites W2106704226 @default.
• W2103412835 cites W2111303992 @default.
• W2103412835 cites W2111414304 @default.
• W2103412835 cites W2116647265 @default.
• W2103412835 cites W2121761033 @default.
• W2103412835 cites W2125851760 @default.
• W2103412835 cites W2134892520 @default.
• W2103412835 cites W2137076742 @default.
• W2103412835 cites W2137180017 @default.
• W2103412835 cites W2151409320 @default.
• W2103412835 cites W2153997445 @default.
• W2103412835 cites W2154384871 @default.
• W2103412835 cites W2168198916 @default.
• W2103412835 cites W2168696662 @default.
• W2103412835 cites W4250812635 @default.
• W2103412835 doi "https://doi.org/10.1093/molbev/msr317" @default.
• W2103412835 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/22319162" @default.
• W2103412835 hasPublicationYear "2012" @default.
• W2103412835 type Work @default.
• W2103412835 sameAs 2103412835 @default.
• W2103412835 citedByCount "72" @default.
• W2103412835 countsByYear W21034128352012 @default.
• W2103412835 countsByYear W21034128352013 @default.
• W2103412835 countsByYear W21034128352014 @default.
• W2103412835 countsByYear W21034128352015 @default.
• W2103412835 countsByYear W21034128352016 @default.
• W2103412835 countsByYear W21034128352017 @default.
• W2103412835 countsByYear W21034128352018 @default.
• W2103412835 countsByYear W21034128352019 @default.
• W2103412835 countsByYear W21034128352020 @default.
• W2103412835 countsByYear W21034128352021 @default.
• W2103412835 countsByYear W21034128352022 @default.
• W2103412835 countsByYear W21034128352023 @default.
• W2103412835 crossrefType "journal-article" @default.
• W2103412835 hasAuthorship W2103412835A5017621384 @default.
• W2103412835 hasAuthorship W2103412835A5051696956 @default.
• W2103412835 hasAuthorship W2103412835A5063037795 @default.
• W2103412835 hasBestOaLocation W21034128351 @default.
• W2103412835 hasConcept C104317684 @default.
• W2103412835 hasConcept C113174947 @default.
• W2103412835 hasConcept C123439655 @default.
• W2103412835 hasConcept C134306372 @default.
• W2103412835 hasConcept C136119220 @default.
• W2103412835 hasConcept C141231307 @default.
• W2103412835 hasConcept C154945302 @default.
• W2103412835 hasConcept C184898388 @default.
• W2103412835 hasConcept C193252679 @default.
• W2103412835 hasConcept C199360897 @default.
• W2103412835 hasConcept C202444582 @default.
• W2103412835 hasConcept C26619641 @default.
• W2103412835 hasConcept C33923547 @default.
• W2103412835 hasConcept C41008148 @default.
• W2103412835 hasConcept C43521106 @default.
• W2103412835 hasConcept C44465124 @default.
• W2103412835 hasConcept C54355233 @default.
• W2103412835 hasConcept C5475112 @default.
• W2103412835 hasConcept C55919133 @default.
• W2103412835 hasConcept C70343354 @default.
• W2103412835 hasConcept C70721500 @default.
• W2103412835 hasConcept C78458016 @default.
• W2103412835 hasConcept C79337645 @default.
• W2103412835 hasConcept C81999800 @default.
• W2103412835 hasConcept C86803240 @default.
• W2103412835 hasConcept C90132467 @default.
• W2103412835 hasConceptScore W2103412835C104317684 @default.
• W2103412835 hasConceptScore W2103412835C113174947 @default.
• W2103412835 hasConceptScore W2103412835C123439655 @default.
• W2103412835 hasConceptScore W2103412835C134306372 @default.
• W2103412835 hasConceptScore W2103412835C136119220 @default.
• W2103412835 hasConceptScore W2103412835C141231307 @default.
• W2103412835 hasConceptScore W2103412835C154945302 @default.
• W2103412835 hasConceptScore W2103412835C184898388 @default.
• W2103412835 hasConceptScore W2103412835C193252679 @default.
• W2103412835 hasConceptScore W2103412835C199360897 @default.
• W2103412835 hasConceptScore W2103412835C202444582 @default.
• W2103412835 hasConceptScore W2103412835C26619641 @default.

• next