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- W2106379008 abstract "We present the q-group index, a novel data structure for read mapping tailored towards graphics processing units (GPUs) with a small memory footprint and efficient parallel algorithms for querying and building. On top of the q-group index we introduce PEANUT, a highly parallel GPU-based read mapper. PEANUT provides the possibility to output both the best hits or all hits of a read. Our benchmarks show that PEANUT outperforms other state-of-the-art read mappers in terms of speed while maintaining or slightly increasing precision, recall and sensitivity." @default.
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- W2106379008 date "2014-09-30" @default.
- W2106379008 modified "2023-09-25" @default.
- W2106379008 title "Massively parallel read mapping on GPUs with theq-group index and PEANUT" @default.
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- W2106379008 doi "https://doi.org/10.7717/peerj.606" @default.
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