FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W2110304798> ?p ?o ?g. }

• W2110304798 endingPage "911" @default.
• W2110304798 startingPage "903" @default.
• W2110304798 abstract "A data set of 89 protein–RNA complexes has been extracted from the Protein Data Bank, and the nucleic acid recognition sites characterized through direct contacts, accessible surface area, and secondary structure motifs. The differences between RNA recognition sites that bind to RNAs in functional classes has also been analyzed. Analysis of the complete data set revealed that van der Waals interactions are more numerous than hydrogen bonds and the contacts made to the nucleic acid backbone occur more frequently than specific contacts to nucleotide bases. Of the base-specific contacts that were observed, contacts to guanine and adenine occurred most frequently. The most favored amino acid–nucleotide pairings observed were lysine–phosphate, tyrosine–uracil, arginine–phosphate, phenylalanine–adenine and tryptophan–guanine. The amino acid propensities showed that positively charged and polar residues were favored as expected, but also so were tryptophan and glycine. The propensities calculated for the functional classes showed trends similar to those observed for the complete data set. However, the analysis of hydrogen bond and van der Waal contacts showed that in general proteins complexed with messenger RNA, transfer RNA and viral RNA have more base specific contacts and less backbone contacts than expected, while proteins complexed with ribosomal RNA have less base-specific contacts than the expected. Hence, whilst the types of amino acids involved in the interfaces are similar, the distribution of specific contacts is dependent upon the functional class of the RNA bound. Proteins 2007. © 2006 Wiley-Liss, Inc." @default.
• W2110304798 created "2016-06-24" @default.
• W2110304798 creator A5014021227 @default.
• W2110304798 creator A5050863218 @default.
• W2110304798 creator A5056247922 @default.
• W2110304798 date "2006-12-21" @default.
• W2110304798 modified "2023-09-23" @default.
• W2110304798 title "Protein-RNA interactions: Structural analysis and functional classes" @default.
• W2110304798 cites W1967554461 @default.
• W2110304798 cites W1981482769 @default.
• W2110304798 cites W1983534198 @default.
• W2110304798 cites W1986173894 @default.
• W2110304798 cites W1993926172 @default.
• W2110304798 cites W2000213161 @default.
• W2110304798 cites W2005423065 @default.
• W2110304798 cites W2011314862 @default.
• W2110304798 cites W2027119345 @default.
• W2110304798 cites W2044775131 @default.
• W2110304798 cites W2046788335 @default.
• W2110304798 cites W2051628563 @default.
• W2110304798 cites W2053208573 @default.
• W2110304798 cites W2061493682 @default.
• W2110304798 cites W2077614707 @default.
• W2110304798 cites W2078819000 @default.
• W2110304798 cites W2079873244 @default.
• W2110304798 cites W2085277871 @default.
• W2110304798 cites W2099485600 @default.
• W2110304798 cites W2119966574 @default.
• W2110304798 cites W2121447534 @default.
• W2110304798 cites W2130479394 @default.
• W2110304798 cites W2137154596 @default.
• W2110304798 cites W2145382385 @default.
• W2110304798 cites W2151687360 @default.
• W2110304798 cites W2155283071 @default.
• W2110304798 cites W2166248605 @default.
• W2110304798 cites W4246643264 @default.
• W2110304798 doi "https://doi.org/10.1002/prot.21211" @default.
• W2110304798 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/17186525" @default.
• W2110304798 hasPublicationYear "2006" @default.
• W2110304798 type Work @default.
• W2110304798 sameAs 2110304798 @default.
• W2110304798 citedByCount "164" @default.
• W2110304798 countsByYear W21103047982012 @default.
• W2110304798 countsByYear W21103047982013 @default.
• W2110304798 countsByYear W21103047982014 @default.
• W2110304798 countsByYear W21103047982015 @default.
• W2110304798 countsByYear W21103047982016 @default.
• W2110304798 countsByYear W21103047982017 @default.
• W2110304798 countsByYear W21103047982018 @default.
• W2110304798 countsByYear W21103047982019 @default.
• W2110304798 countsByYear W21103047982020 @default.
• W2110304798 countsByYear W21103047982021 @default.
• W2110304798 countsByYear W21103047982022 @default.
• W2110304798 countsByYear W21103047982023 @default.
• W2110304798 crossrefType "journal-article" @default.
• W2110304798 hasAuthorship W2110304798A5014021227 @default.
• W2110304798 hasAuthorship W2110304798A5050863218 @default.
• W2110304798 hasAuthorship W2110304798A5056247922 @default.
• W2110304798 hasConcept C104317684 @default.
• W2110304798 hasConcept C112887158 @default.
• W2110304798 hasConcept C178790620 @default.
• W2110304798 hasConcept C185592680 @default.
• W2110304798 hasConcept C24107716 @default.
• W2110304798 hasConcept C2778301229 @default.
• W2110304798 hasConcept C2779554091 @default.
• W2110304798 hasConcept C32909587 @default.
• W2110304798 hasConcept C512185932 @default.
• W2110304798 hasConcept C515207424 @default.
• W2110304798 hasConcept C552990157 @default.
• W2110304798 hasConcept C55493867 @default.
• W2110304798 hasConcept C67705224 @default.
• W2110304798 hasConcept C71240020 @default.
• W2110304798 hasConceptScore W2110304798C104317684 @default.
• W2110304798 hasConceptScore W2110304798C112887158 @default.
• W2110304798 hasConceptScore W2110304798C178790620 @default.
• W2110304798 hasConceptScore W2110304798C185592680 @default.
• W2110304798 hasConceptScore W2110304798C24107716 @default.
• W2110304798 hasConceptScore W2110304798C2778301229 @default.
• W2110304798 hasConceptScore W2110304798C2779554091 @default.
• W2110304798 hasConceptScore W2110304798C32909587 @default.
• W2110304798 hasConceptScore W2110304798C512185932 @default.
• W2110304798 hasConceptScore W2110304798C515207424 @default.
• W2110304798 hasConceptScore W2110304798C552990157 @default.
• W2110304798 hasConceptScore W2110304798C55493867 @default.
• W2110304798 hasConceptScore W2110304798C67705224 @default.
• W2110304798 hasConceptScore W2110304798C71240020 @default.
• W2110304798 hasIssue "4" @default.
• W2110304798 hasLocation W21103047981 @default.
• W2110304798 hasLocation W21103047982 @default.
• W2110304798 hasOpenAccess W2110304798 @default.
• W2110304798 hasPrimaryLocation W21103047981 @default.
• W2110304798 hasRelatedWork W1136448452 @default.
• W2110304798 hasRelatedWork W123408742 @default.
• W2110304798 hasRelatedWork W1491871195 @default.
• W2110304798 hasRelatedWork W1515888510 @default.
• W2110304798 hasRelatedWork W200549799 @default.
• W2110304798 hasRelatedWork W2039903551 @default.
• W2110304798 hasRelatedWork W2052857535 @default.

• next