Matches in SemOpenAlex for { <https://semopenalex.org/work/W2110731687> ?p ?o ?g. }
Showing items 1 to 69 of
69
with 100 items per page.
- W2110731687 endingPage "57" @default.
- W2110731687 startingPage "57" @default.
- W2110731687 abstract "Novel technologies such as ChIP-Seq and DNAse-Seq have enabled scientists to gather ever increasing amounts of data on epigenetic modifications in various cell types and conditions. Epigenomic marks (e.g. histone marks) are often distributed over large (several Kb) genomic regions, and display non-trivial structures, such as multimodality and plateaus, which may be indicative of biologically relevant features, such as nucleosome displacement or interaction with cofactors. Standard clustering and visualisation techniques developed for microarrays are not immediately transferable to the epigenomic scenario though: peaks have different lengths, the data is digital, and the noise distribution is not fully understood. Here, we propose a simple method for hierarchical clustering of epigenomic marks based on Dynamic Time Warping, a popular technique in signal processing which locally stretches/ compresses two signals in order to best match their shape. We implement the method in an open source Python package, and demonstrate its working on simultaneous clustering of multiple histone marks." @default.
- W2110731687 created "2016-06-24" @default.
- W2110731687 creator A5011772707 @default.
- W2110731687 creator A5017674487 @default.
- W2110731687 creator A5060937554 @default.
- W2110731687 date "2013-04-08" @default.
- W2110731687 modified "2023-09-24" @default.
- W2110731687 title "DGW: an exploratory data analysis tool for clustering and visualisation of epigenomic marks" @default.
- W2110731687 doi "https://doi.org/10.14806/ej.19.a.641" @default.
- W2110731687 hasPublicationYear "2013" @default.
- W2110731687 type Work @default.
- W2110731687 sameAs 2110731687 @default.
- W2110731687 citedByCount "0" @default.
- W2110731687 crossrefType "journal-article" @default.
- W2110731687 hasAuthorship W2110731687A5011772707 @default.
- W2110731687 hasAuthorship W2110731687A5017674487 @default.
- W2110731687 hasAuthorship W2110731687A5060937554 @default.
- W2110731687 hasBestOaLocation W21107316871 @default.
- W2110731687 hasConcept C104317684 @default.
- W2110731687 hasConcept C121912465 @default.
- W2110731687 hasConcept C150194340 @default.
- W2110731687 hasConcept C153180895 @default.
- W2110731687 hasConcept C154945302 @default.
- W2110731687 hasConcept C190727270 @default.
- W2110731687 hasConcept C205711294 @default.
- W2110731687 hasConcept C36464697 @default.
- W2110731687 hasConcept C41008148 @default.
- W2110731687 hasConcept C54355233 @default.
- W2110731687 hasConcept C70721500 @default.
- W2110731687 hasConcept C73555534 @default.
- W2110731687 hasConcept C86803240 @default.
- W2110731687 hasConceptScore W2110731687C104317684 @default.
- W2110731687 hasConceptScore W2110731687C121912465 @default.
- W2110731687 hasConceptScore W2110731687C150194340 @default.
- W2110731687 hasConceptScore W2110731687C153180895 @default.
- W2110731687 hasConceptScore W2110731687C154945302 @default.
- W2110731687 hasConceptScore W2110731687C190727270 @default.
- W2110731687 hasConceptScore W2110731687C205711294 @default.
- W2110731687 hasConceptScore W2110731687C36464697 @default.
- W2110731687 hasConceptScore W2110731687C41008148 @default.
- W2110731687 hasConceptScore W2110731687C54355233 @default.
- W2110731687 hasConceptScore W2110731687C70721500 @default.
- W2110731687 hasConceptScore W2110731687C73555534 @default.
- W2110731687 hasConceptScore W2110731687C86803240 @default.
- W2110731687 hasIssue "A" @default.
- W2110731687 hasLocation W21107316871 @default.
- W2110731687 hasLocation W21107316872 @default.
- W2110731687 hasLocation W21107316873 @default.
- W2110731687 hasLocation W21107316874 @default.
- W2110731687 hasLocation W21107316875 @default.
- W2110731687 hasOpenAccess W2110731687 @default.
- W2110731687 hasPrimaryLocation W21107316871 @default.
- W2110731687 hasRelatedWork W1999627569 @default.
- W2110731687 hasRelatedWork W2038816222 @default.
- W2110731687 hasRelatedWork W2361661870 @default.
- W2110731687 hasRelatedWork W2363669182 @default.
- W2110731687 hasRelatedWork W2380998760 @default.
- W2110731687 hasRelatedWork W2525150146 @default.
- W2110731687 hasRelatedWork W3107474891 @default.
- W2110731687 hasRelatedWork W4317702496 @default.
- W2110731687 hasRelatedWork W763609066 @default.
- W2110731687 hasRelatedWork W1549056443 @default.
- W2110731687 hasVolume "19" @default.
- W2110731687 isParatext "false" @default.
- W2110731687 isRetracted "false" @default.
- W2110731687 magId "2110731687" @default.
- W2110731687 workType "article" @default.