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- W2113419962 abstract "Phylogenetic resolution is often low within groups of recently diverged taxa due to a paucity of phylogenetically informative characters. We tested the relative utility of seven noncoding cpDNA regions and a pair of homoeologous nuclear genes for resolving recent divergences, using tetraploid cottons ( Gossypium ) as a model system. The five tetraploid species of Gossypium are a monophyletic assemblage derived from an allopolyploidization event that probably occurred within the last 0.5–2 million years. Previous analysis of cpDNA restriction site data provided only partial resolution within this clade despite a large number of enzymes employed. We sequenced three cpDNA introns ( rpl16 , rpoC1 , ndhA ) and four cpDNA spacers ( accD ‐ psaI , trnL ‐ trnF , trnT ‐ trnL , atpB ‐ rbcL ) for a total of over 7 kb of sequence per taxon, yet obtained only four informative nucleotide substitutions (0.05%) resulting in incomplete phylogenetic resolution. In addition, we sequenced a 1.65‐kb region of a homoeologous pair of nuclear‐encoded alcohol dehydrogenase ( Adh ) genes. In contrast with the cpDNA sequence data, the Adh homoeologues yielded 25 informative characters (0.76%) and provided a robust and completely resolved topology that is concordant with previous cladistic and phenetic analyses. The enhanced resolution obtained using the nuclear genes reflects an approximately three‐ to sixfold increase in nucleotide substitution rate relative to the plastome spacers and introns." @default.
- W2113419962 created "2016-06-24" @default.
- W2113419962 creator A5012703756 @default.
- W2113419962 creator A5054417776 @default.
- W2113419962 creator A5057015137 @default.
- W2113419962 creator A5077089089 @default.
- W2113419962 creator A5087742193 @default.
- W2113419962 date "1998-09-01" @default.
- W2113419962 modified "2023-10-02" @default.
- W2113419962 title "The tortoise and the hare: choosing between noncoding plastome and nuclear <i>Adh</i> sequences for phylogeny reconstruction in a recently diverged plant group" @default.
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