FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W2114606860> ?p ?o ?g. }

• W2114606860 endingPage "e68200" @default.
• W2114606860 startingPage "e68200" @default.
• W2114606860 abstract "Despite the recent sequencing of seven ant genomes, no genomic data are available for the genus Formica, an important group for the study of eusocial traits. We sequenced the transcriptome of the ant Formica exsecta with the 454 FLX Titanium technology from a pooled sample of workers from 70 Finnish colonies.About 1,000,000 reads were obtained from a normalised cDNA library. We compared the assemblers MIRA3.0 and Newbler2.6 and showed that the latter performed better on this dataset due to a new option which is dedicated to improve contig formation in low depth portions of the assemblies. The 29,579 contigs represent 27 Mb. 50% showed similarity with known proteins and 25% could be assigned a category of gene ontology. We found more than 13,000 high-quality single nucleotide polymorphisms. The Δ9 desaturase gene family is an important multigene family involved in chemical communication in insects. We found six Δ9 desaturases in this Formica exsecta transcriptome dataset that were used to reconstruct a maximum-likelihood phylogeny of insect desaturases and to test for signatures of positive selection in this multigene family in ant lineages. We found differences with previous phylogenies of this gene family in ants, and found two clades potentially under positive selection.This first transcriptome reference sequence of Formica exsecta provided sequence and polymorphism data that will allow researchers working on Formica ants to develop studies to tackle the genetic basis of eusocial phenotypes. In addition, this study provided some general guidelines for de novo transcriptome assembly that should be useful for future transcriptome sequencing projects. Finally, we found potential signatures of positive selection in some clades of the Δ9 desaturase gene family in ants, which suggest the potential role of sequence divergence and adaptive evolution in shaping the large diversity of chemical cues in social insects." @default.
• W2114606860 created "2016-06-24" @default.
• W2114606860 creator A5014759618 @default.
• W2114606860 creator A5018996936 @default.
• W2114606860 creator A5029302790 @default.
• W2114606860 creator A5044074661 @default.
• W2114606860 creator A5049576700 @default.
• W2114606860 creator A5070529321 @default.
• W2114606860 creator A5076170745 @default.
• W2114606860 creator A5084891320 @default.
• W2114606860 date "2013-07-12" @default.
• W2114606860 modified "2023-10-16" @default.
• W2114606860 title "Transcriptome Characterisation of the Ant Formica exsecta with New Insights into the Evolution of Desaturase Genes in Social Hymenoptera" @default.
• W2114606860 cites W118013854 @default.
• W2114606860 cites W1963957860 @default.
• W2114606860 cites W1966421880 @default.
• W2114606860 cites W1968050693 @default.
• W2114606860 cites W1969491977 @default.
• W2114606860 cites W1971899779 @default.
• W2114606860 cites W1972814038 @default.
• W2114606860 cites W1980471868 @default.
• W2114606860 cites W1981397361 @default.
• W2114606860 cites W1982717654 @default.
• W2114606860 cites W1983805417 @default.
• W2114606860 cites W1985484001 @default.
• W2114606860 cites W1991359154 @default.
• W2114606860 cites W1991518077 @default.
• W2114606860 cites W1994586595 @default.
• W2114606860 cites W1996423252 @default.
• W2114606860 cites W1996516710 @default.
• W2114606860 cites W1998767819 @default.
• W2114606860 cites W1998994192 @default.
• W2114606860 cites W2001856720 @default.
• W2114606860 cites W2003960636 @default.
• W2114606860 cites W2005601357 @default.
• W2114606860 cites W2005607933 @default.
• W2114606860 cites W2007438467 @default.
• W2114606860 cites W2012002235 @default.
• W2114606860 cites W2022538278 @default.
• W2114606860 cites W2023485252 @default.
• W2114606860 cites W2023833118 @default.
• W2114606860 cites W2026837335 @default.
• W2114606860 cites W2028762212 @default.
• W2114606860 cites W2034285706 @default.
• W2114606860 cites W2038357425 @default.
• W2114606860 cites W2042281811 @default.
• W2114606860 cites W2043445794 @default.
• W2114606860 cites W2046381930 @default.
• W2114606860 cites W2051621182 @default.
• W2114606860 cites W2051806533 @default.
• W2114606860 cites W2051961034 @default.
• W2114606860 cites W2057456873 @default.
• W2114606860 cites W2057538311 @default.
• W2114606860 cites W2059007127 @default.
• W2114606860 cites W2061309502 @default.
• W2114606860 cites W2082479005 @default.
• W2114606860 cites W2100703845 @default.
• W2114606860 cites W2107493728 @default.
• W2114606860 cites W2108234281 @default.
• W2114606860 cites W2110065044 @default.
• W2114606860 cites W2110335151 @default.
• W2114606860 cites W2112676479 @default.
• W2114606860 cites W2112814753 @default.
• W2114606860 cites W2114828923 @default.
• W2114606860 cites W2116111392 @default.
• W2114606860 cites W2119041416 @default.
• W2114606860 cites W2120457919 @default.
• W2114606860 cites W2120611093 @default.
• W2114606860 cites W2120772351 @default.
• W2114606860 cites W2124351063 @default.
• W2114606860 cites W2124799570 @default.
• W2114606860 cites W2125127171 @default.
• W2114606860 cites W2127140977 @default.
• W2114606860 cites W2136872570 @default.
• W2114606860 cites W2139463782 @default.
• W2114606860 cites W2142678478 @default.
• W2114606860 cites W2142950294 @default.
• W2114606860 cites W2144653642 @default.
• W2114606860 cites W2144654387 @default.
• W2114606860 cites W2145820796 @default.
• W2114606860 cites W2145983775 @default.
• W2114606860 cites W2147865566 @default.
• W2114606860 cites W2152076818 @default.
• W2114606860 cites W2161612432 @default.
• W2114606860 cites W2161815151 @default.
• W2114606860 cites W2162587582 @default.
• W2114606860 cites W2162666803 @default.
• W2114606860 cites W2163716224 @default.
• W2114606860 cites W2164154943 @default.
• W2114606860 cites W2168696662 @default.
• W2114606860 cites W2169752264 @default.
• W2114606860 cites W2170565120 @default.
• W2114606860 cites W2176340660 @default.
• W2114606860 cites W2975217839 @default.
• W2114606860 cites W4247053599 @default.
• W2114606860 doi "https://doi.org/10.1371/journal.pone.0068200" @default.
• W2114606860 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/3709892" @default.
• W2114606860 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/23874539" @default.

• next