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• W2118969624 startingPage "122" @default.
• W2118969624 abstract "The Athila retroelements of Arabidopsis thaliana encode a putative envelope gene, suggesting that they are infectious retroviruses. Because most insertions are highly degenerate, we undertook a comprehensive analysis of the A. thaliana genome sequence to discern their conserved features. One family ( Athila4 ) was identified whose members are largely intact and share >94% nucleotide identity. As a basis for comparison, related elements (the Calypso elements) were characterized from soybean. Consensus Calypso and Athila4 elements are 12–14 kb in length and have long terminal repeats of 1.3–1.8 kb. Gag and Pol are encoded on a single open reading frame (ORF) of 1801 ( Calypso ) and 1911 ( Athila4 ) amino acids. Following the Gag-Pol ORF are noncoding regions of ∼0.7 and 2 kb, which, respectively, flank the env -like gene. The env -like ORF begins with a putative splice acceptor site and encodes a protein with a predicted central transmembrane domain, similar to retroviral env genes. RNA of Athila elements was detected in an A. thaliana strain with decreased DNA methylation ( ddm1 ). Additionally, a PCR survey identified related reverse transcriptases in diverse angiosperm genomes. Their ubiquitous nature and the potential for horizontal transfer by infection implicates these endogenous retroviruses as important vehicles for plant genome evolution." @default.
• W2118969624 created "2016-06-24" @default.
• W2118969624 creator A5006325126 @default.
• W2118969624 creator A5049418431 @default.
• W2118969624 date "2001-12-14" @default.
• W2118969624 modified "2023-10-09" @default.
• W2118969624 title "<i>Athila4</i> of <i>Arabidopsis</i> and <i>Calypso</i> of Soybean Define a Lineage of Endogenous Plant Retroviruses" @default.
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• W2118969624 doi "https://doi.org/10.1101/gr.196001" @default.
• W2118969624 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/155253" @default.
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