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- W2123231702 abstract "Bio-jETI is a framework for model-based, graphical development and execution of bioinformatics analysis processes. With the GeneSys code generation framework we can automatically compile the workflow models into native, stand-alone program code. We show via a phylogenetic analysis workflow designed by the DNA Data Bank of Japan (DDBJ) how we generate 6 variants of Java code from the corresponding process model realized in Bio-jETI. Performance measurements show that 1) the overall workflow execution time is dominated by the remote services it uses, and thus 2)all 6 variants are almost as fast as the handwritten Java of DDBJ. This way, we obtain efficient native code essentially without program- ming. Thus, we demonstrate in this paper that model- based workflow development in Bio-jETI offers several advantages over manual implementation – including higher agility, greater transparency and better maintainability – without compromising the runtime performance." @default.
- W2123231702 created "2016-06-24" @default.
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- W2123231702 date "2009-06-01" @default.
- W2123231702 modified "2023-09-23" @default.
- W2123231702 title "From Bio-jETI Process Models to Native Code" @default.
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- W2123231702 doi "https://doi.org/10.1109/iceccs.2009.50" @default.
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