FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W2124201730> ?p ?o ?g. }

• W2124201730 endingPage "2268" @default.
• W2124201730 startingPage "2261" @default.
• W2124201730 abstract "Abstract Motivation: We present an integrated toolkit, BoBro2.0, for prediction and analysis of cis-regulatory motifs. This toolkit can (i) reliably identify statistically significant cis-regulatory motifs at a genome scale; (ii) accurately scan for all motif instances of a query motif in specified genomic regions using a novel method for P-value estimation; (iii) provide highly reliable comparisons and clustering of identified motifs, which takes into consideration the weak signals from the flanking regions of the motifs; and (iv) analyze co-occurring motifs in the regulatory regions. Results: We have carried out systematic comparisons between motif predictions using BoBro2.0 and the MEME package. The comparison results on Escherichia coli K12 genome and the human genome show that BoBro2.0 can identify the statistically significant motifs at a genome scale more efficiently, identify motif instances more accurately and get more reliable motif clusters than MEME. In addition, BoBro2.0 provides correlational analyses among the identified motifs to facilitate the inference of joint regulation relationships of transcription factors. Availability: The source code of the program is freely available for noncommercial uses at http://code.google.com/p/bobro/. Contact: xyn@bmb.uga.edu Supplementary information: Supplementary data are available at Bioinformatics online." @default.
• W2124201730 created "2016-06-24" @default.
• W2124201730 creator A5013688196 @default.
• W2124201730 creator A5017344694 @default.
• W2124201730 creator A5020171946 @default.
• W2124201730 creator A5047291076 @default.
• W2124201730 creator A5085661886 @default.
• W2124201730 creator A5090843422 @default.
• W2124201730 date "2013-07-10" @default.
• W2124201730 modified "2023-09-23" @default.
• W2124201730 title "An integrated toolkit for accurate prediction and analysis of cis-regulatory motifs at a genome scale" @default.
• W2124201730 cites W1522028153 @default.
• W2124201730 cites W1529365648 @default.
• W2124201730 cites W1540890594 @default.
• W2124201730 cites W1966841723 @default.
• W2124201730 cites W1971945312 @default.
• W2124201730 cites W1983983428 @default.
• W2124201730 cites W2006439377 @default.
• W2124201730 cites W2012139697 @default.
• W2124201730 cites W2016160555 @default.
• W2124201730 cites W2036234991 @default.
• W2124201730 cites W2041726559 @default.
• W2124201730 cites W2055109879 @default.
• W2124201730 cites W2064228319 @default.
• W2124201730 cites W2074703985 @default.
• W2124201730 cites W2081717714 @default.
• W2124201730 cites W2085442947 @default.
• W2124201730 cites W2086699924 @default.
• W2124201730 cites W2087439897 @default.
• W2124201730 cites W2092906794 @default.
• W2124201730 cites W2097175728 @default.
• W2124201730 cites W2108531495 @default.
• W2124201730 cites W2108649763 @default.
• W2124201730 cites W2108959557 @default.
• W2124201730 cites W2114411529 @default.
• W2124201730 cites W2114446330 @default.
• W2124201730 cites W2114650383 @default.
• W2124201730 cites W2121365413 @default.
• W2124201730 cites W2126188642 @default.
• W2124201730 cites W2126633745 @default.
• W2124201730 cites W2131510173 @default.
• W2124201730 cites W2136292095 @default.
• W2124201730 cites W2139915240 @default.
• W2124201730 cites W2140899665 @default.
• W2124201730 cites W2141408320 @default.
• W2124201730 cites W2142051291 @default.
• W2124201730 cites W2148032724 @default.
• W2124201730 cites W2149769193 @default.
• W2124201730 cites W2151945801 @default.
• W2124201730 cites W2156553342 @default.
• W2124201730 cites W2157009395 @default.
• W2124201730 cites W2164814636 @default.
• W2124201730 cites W2165392091 @default.
• W2124201730 cites W2166406784 @default.
• W2124201730 cites W2169735044 @default.
• W2124201730 cites W2408658366 @default.
• W2124201730 cites W4245245389 @default.
• W2124201730 doi "https://doi.org/10.1093/bioinformatics/btt397" @default.
• W2124201730 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/23846744" @default.
• W2124201730 hasPublicationYear "2013" @default.
• W2124201730 type Work @default.
• W2124201730 sameAs 2124201730 @default.
• W2124201730 citedByCount "30" @default.
• W2124201730 countsByYear W21242017302013 @default.
• W2124201730 countsByYear W21242017302014 @default.
• W2124201730 countsByYear W21242017302015 @default.
• W2124201730 countsByYear W21242017302016 @default.
• W2124201730 countsByYear W21242017302017 @default.
• W2124201730 countsByYear W21242017302018 @default.
• W2124201730 countsByYear W21242017302019 @default.
• W2124201730 countsByYear W21242017302022 @default.
• W2124201730 countsByYear W21242017302023 @default.
• W2124201730 crossrefType "journal-article" @default.
• W2124201730 hasAuthorship W2124201730A5013688196 @default.
• W2124201730 hasAuthorship W2124201730A5017344694 @default.
• W2124201730 hasAuthorship W2124201730A5020171946 @default.
• W2124201730 hasAuthorship W2124201730A5047291076 @default.
• W2124201730 hasAuthorship W2124201730A5085661886 @default.
• W2124201730 hasAuthorship W2124201730A5090843422 @default.
• W2124201730 hasBestOaLocation W21242017301 @default.
• W2124201730 hasConcept C104317684 @default.
• W2124201730 hasConcept C117745874 @default.
• W2124201730 hasConcept C121332964 @default.
• W2124201730 hasConcept C124101348 @default.
• W2124201730 hasConcept C141231307 @default.
• W2124201730 hasConcept C154945302 @default.
• W2124201730 hasConcept C21592294 @default.
• W2124201730 hasConcept C24890656 @default.
• W2124201730 hasConcept C2776214188 @default.
• W2124201730 hasConcept C32276052 @default.
• W2124201730 hasConcept C41008148 @default.
• W2124201730 hasConcept C54355233 @default.
• W2124201730 hasConcept C70721500 @default.
• W2124201730 hasConcept C73555534 @default.
• W2124201730 hasConcept C86339819 @default.
• W2124201730 hasConcept C86803240 @default.
• W2124201730 hasConceptScore W2124201730C104317684 @default.
• W2124201730 hasConceptScore W2124201730C117745874 @default.

• next