FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W2124779706> ?p ?o ?g. }

• W2124779706 endingPage "e29" @default.
• W2124779706 startingPage "e29" @default.
• W2124779706 abstract "An increasing amount of studies integrate mRNA sequencing data into MS-based proteomics to complement the translation product search space. However, several factors, including extensive regulation of mRNA translation and the need for three- or six-frame-translation, impede the use of mRNA-seq data for the construction of a protein sequence search database. With that in mind, we developed the PROTEOFORMER tool that automatically processes data of the recently developed ribosome profiling method (sequencing of ribosome-protected mRNA fragments), resulting in genome-wide visualization of ribosome occupancy. Our tool also includes a translation initiation site calling algorithm allowing the delineation of the open reading frames (ORFs) of all translation products. A complete protein synthesis-based sequence database can thus be compiled for mass spectrometry-based identification. This approach increases the overall protein identification rates with 3% and 11% (improved and new identifications) for human and mouse, respectively, and enables proteome-wide detection of 5'-extended proteoforms, upstream ORF translation and near-cognate translation start sites. The PROTEOFORMER tool is available as a stand-alone pipeline and has been implemented in the galaxy framework for ease of use." @default.
• W2124779706 created "2016-06-24" @default.
• W2124779706 creator A5002559351 @default.
• W2124779706 creator A5003556658 @default.
• W2124779706 creator A5017488032 @default.
• W2124779706 creator A5024174357 @default.
• W2124779706 creator A5024401362 @default.
• W2124779706 creator A5048875611 @default.
• W2124779706 creator A5058473391 @default.
• W2124779706 creator A5066923315 @default.
• W2124779706 creator A5071163795 @default.
• W2124779706 creator A5079964045 @default.
• W2124779706 creator A5088498339 @default.
• W2124779706 date "2014-12-15" @default.
• W2124779706 modified "2023-10-10" @default.
• W2124779706 title "PROTEOFORMER: deep proteome coverage through ribosome profiling and MS integration" @default.
• W2124779706 cites W1568341953 @default.
• W2124779706 cites W1963396472 @default.
• W2124779706 cites W1975847255 @default.
• W2124779706 cites W1986705163 @default.
• W2124779706 cites W2010005720 @default.
• W2124779706 cites W2014201551 @default.
• W2124779706 cites W2022873228 @default.
• W2124779706 cites W2024751967 @default.
• W2124779706 cites W2027469236 @default.
• W2124779706 cites W2033492309 @default.
• W2124779706 cites W2042228684 @default.
• W2124779706 cites W2045022080 @default.
• W2124779706 cites W2045440227 @default.
• W2124779706 cites W2058322072 @default.
• W2124779706 cites W2067183112 @default.
• W2124779706 cites W2071849521 @default.
• W2124779706 cites W2081090039 @default.
• W2124779706 cites W2092760343 @default.
• W2124779706 cites W2107578201 @default.
• W2124779706 cites W2108234281 @default.
• W2124779706 cites W2109602972 @default.
• W2124779706 cites W2113224683 @default.
• W2124779706 cites W2113620105 @default.
• W2124779706 cites W2122064342 @default.
• W2124779706 cites W2122732537 @default.
• W2124779706 cites W2123724865 @default.
• W2124779706 cites W2128551987 @default.
• W2124779706 cites W2136482257 @default.
• W2124779706 cites W2139096442 @default.
• W2124779706 cites W2140729960 @default.
• W2124779706 cites W2166810745 @default.
• W2124779706 cites W2167540700 @default.
• W2124779706 cites W2168133698 @default.
• W2124779706 cites W2168138973 @default.
• W2124779706 cites W2169456326 @default.
• W2124779706 cites W4210290733 @default.
• W2124779706 doi "https://doi.org/10.1093/nar/gku1283" @default.
• W2124779706 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/4357689" @default.
• W2124779706 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/25510491" @default.
• W2124779706 hasPublicationYear "2014" @default.
• W2124779706 type Work @default.
• W2124779706 sameAs 2124779706 @default.
• W2124779706 citedByCount "125" @default.
• W2124779706 countsByYear W21247797062013 @default.
• W2124779706 countsByYear W21247797062015 @default.
• W2124779706 countsByYear W21247797062016 @default.
• W2124779706 countsByYear W21247797062017 @default.
• W2124779706 countsByYear W21247797062018 @default.
• W2124779706 countsByYear W21247797062019 @default.
• W2124779706 countsByYear W21247797062020 @default.
• W2124779706 countsByYear W21247797062021 @default.
• W2124779706 countsByYear W21247797062022 @default.
• W2124779706 countsByYear W21247797062023 @default.
• W2124779706 crossrefType "journal-article" @default.
• W2124779706 hasAuthorship W2124779706A5002559351 @default.
• W2124779706 hasAuthorship W2124779706A5003556658 @default.
• W2124779706 hasAuthorship W2124779706A5017488032 @default.
• W2124779706 hasAuthorship W2124779706A5024174357 @default.
• W2124779706 hasAuthorship W2124779706A5024401362 @default.
• W2124779706 hasAuthorship W2124779706A5048875611 @default.
• W2124779706 hasAuthorship W2124779706A5058473391 @default.
• W2124779706 hasAuthorship W2124779706A5066923315 @default.
• W2124779706 hasAuthorship W2124779706A5071163795 @default.
• W2124779706 hasAuthorship W2124779706A5079964045 @default.
• W2124779706 hasAuthorship W2124779706A5088498339 @default.
• W2124779706 hasBestOaLocation W21247797062 @default.
• W2124779706 hasConcept C104317684 @default.
• W2124779706 hasConcept C104397665 @default.
• W2124779706 hasConcept C105580179 @default.
• W2124779706 hasConcept C149364088 @default.
• W2124779706 hasConcept C167625842 @default.
• W2124779706 hasConcept C182325514 @default.
• W2124779706 hasConcept C46111723 @default.
• W2124779706 hasConcept C47289529 @default.
• W2124779706 hasConcept C54355233 @default.
• W2124779706 hasConcept C67705224 @default.
• W2124779706 hasConcept C70721500 @default.
• W2124779706 hasConcept C86803240 @default.
• W2124779706 hasConcept C88478588 @default.
• W2124779706 hasConceptScore W2124779706C104317684 @default.
• W2124779706 hasConceptScore W2124779706C104397665 @default.
• W2124779706 hasConceptScore W2124779706C105580179 @default.

• next