FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W2133102989> ?p ?o ?g. }

• W2133102989 endingPage "1489" @default.
• W2133102989 startingPage "1474" @default.
• W2133102989 abstract "Metagenomic analyses are challenging in metazoans, but high-copy number and repeat regions can be assembled from low-coverage sequencing by genome skimming, which is applied here as a new way of characterizing metagenomes obtained in an ecological or taxonomic context. Illumina shotgun sequencing on two pools of Coleoptera (beetles) of approximately 200 species each were assembled into tens of thousands of scaffolds. Repeated low-coverage sequencing recovered similar scaffold sets consistently, although approximately 70% of scaffolds could not be identified against existing genome databases. Identifiable scaffolds included mitochondrial DNA, conserved sequences with hits to expressed sequence tag and protein databases, and known repeat elements of high and low complexity, including numerous copies of rRNA and histone genes. Assemblies of histones captured a diversity of gene order and primary sequence in Coleoptera. Scaffolds with similarity to multiple sites in available coleopteran genome sequences for Dendroctonus and Tribolium revealed high specificity of scaffolds to either of these genomes, in particular for high-copy number repeats. Numerous clusters of scaffolds mapped to the same genomic site revealed intra- and/or intergenomic variation within a metagenome pool. In addition to effect of taxonomic composition of the metagenomes, the number of mapped scaffolds also revealed structural differences between the two reference genomes, although the significance of this striking finding remains unclear. Finally, apparently exogenous sequences were recovered, including potential food plants, fungal pathogens, and bacterial symbionts. The metagenome skimming approach is useful for capturing the genomic diversity of poorly studied, species-rich lineages and opens new prospects in environmental genomics." @default.
• W2133102989 created "2016-06-24" @default.
• W2133102989 creator A5015940253 @default.
• W2133102989 creator A5042591267 @default.
• W2133102989 creator A5043848442 @default.
• W2133102989 creator A5061841033 @default.
• W2133102989 creator A5074665730 @default.
• W2133102989 date "2015-05-14" @default.
• W2133102989 modified "2023-10-12" @default.
• W2133102989 title "Metagenome Skimming of Insect Specimen Pools: Potential for Comparative Genomics" @default.
• W2133102989 cites W1220385903 @default.
• W2133102989 cites W1846666898 @default.
• W2133102989 cites W1904200119 @default.
• W2133102989 cites W1907556927 @default.
• W2133102989 cites W1969465720 @default.
• W2133102989 cites W1972924519 @default.
• W2133102989 cites W1981624705 @default.
• W2133102989 cites W1993967368 @default.
• W2133102989 cites W1998713720 @default.
• W2133102989 cites W2009599328 @default.
• W2133102989 cites W2010010720 @default.
• W2133102989 cites W2011040204 @default.
• W2133102989 cites W2012016911 @default.
• W2133102989 cites W2017971345 @default.
• W2133102989 cites W2034285706 @default.
• W2133102989 cites W2034415271 @default.
• W2133102989 cites W2037993016 @default.
• W2133102989 cites W2046335214 @default.
• W2133102989 cites W2047526274 @default.
• W2133102989 cites W2053687299 @default.
• W2133102989 cites W2056451184 @default.
• W2133102989 cites W2059359550 @default.
• W2133102989 cites W2059604503 @default.
• W2133102989 cites W2059864757 @default.
• W2133102989 cites W2067700366 @default.
• W2133102989 cites W2071501400 @default.
• W2133102989 cites W2089806726 @default.
• W2133102989 cites W2093343912 @default.
• W2133102989 cites W2093628012 @default.
• W2133102989 cites W2097416602 @default.
• W2133102989 cites W2098466396 @default.
• W2133102989 cites W2099806610 @default.
• W2133102989 cites W2101462556 @default.
• W2133102989 cites W2102502076 @default.
• W2133102989 cites W2106659903 @default.
• W2133102989 cites W2108562483 @default.
• W2133102989 cites W2112732800 @default.
• W2133102989 cites W2118526609 @default.
• W2133102989 cites W2120538319 @default.
• W2133102989 cites W2131286305 @default.
• W2133102989 cites W2131545754 @default.
• W2133102989 cites W2132415967 @default.
• W2133102989 cites W2135581989 @default.
• W2133102989 cites W2135844635 @default.
• W2133102989 cites W2137726521 @default.
• W2133102989 cites W2139183630 @default.
• W2133102989 cites W2142825537 @default.
• W2133102989 cites W2146728635 @default.
• W2133102989 cites W2148355961 @default.
• W2133102989 cites W2149415648 @default.
• W2133102989 cites W2149970447 @default.
• W2133102989 cites W2153562781 @default.
• W2133102989 cites W2154966699 @default.
• W2133102989 cites W2155301734 @default.
• W2133102989 cites W2159038577 @default.
• W2133102989 cites W2161105599 @default.
• W2133102989 cites W2170990028 @default.
• W2133102989 cites W2175189629 @default.
• W2133102989 cites W2185092792 @default.
• W2133102989 cites W2317481118 @default.
• W2133102989 cites W2340109007 @default.
• W2133102989 cites W2544847069 @default.
• W2133102989 cites W4242729757 @default.
• W2133102989 doi "https://doi.org/10.1093/gbe/evv086" @default.
• W2133102989 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/4494052" @default.
• W2133102989 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/25979752" @default.
• W2133102989 hasPublicationYear "2015" @default.
• W2133102989 type Work @default.
• W2133102989 sameAs 2133102989 @default.
• W2133102989 citedByCount "32" @default.
• W2133102989 countsByYear W21331029892015 @default.
• W2133102989 countsByYear W21331029892016 @default.
• W2133102989 countsByYear W21331029892017 @default.
• W2133102989 countsByYear W21331029892018 @default.
• W2133102989 countsByYear W21331029892019 @default.
• W2133102989 countsByYear W21331029892020 @default.
• W2133102989 countsByYear W21331029892021 @default.
• W2133102989 countsByYear W21331029892022 @default.
• W2133102989 countsByYear W21331029892023 @default.
• W2133102989 crossrefType "journal-article" @default.
• W2133102989 hasAuthorship W2133102989A5015940253 @default.
• W2133102989 hasAuthorship W2133102989A5042591267 @default.
• W2133102989 hasAuthorship W2133102989A5043848442 @default.
• W2133102989 hasAuthorship W2133102989A5061841033 @default.
• W2133102989 hasAuthorship W2133102989A5074665730 @default.
• W2133102989 hasBestOaLocation W21331029892 @default.
• W2133102989 hasConcept C101985253 @default.
• W2133102989 hasConcept C104317684 @default.

• next