FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W2133319394> ?p ?o ?g. }

• W2133319394 endingPage "W330" @default.
• W2133319394 startingPage "W326" @default.
• W2133319394 abstract "Our knowledge of metabolism can be represented as a network comprising several thousands of nodes (compounds and reactions). Several groups applied graph theory to analyse the topological properties of this network and to infer metabolic pathways by path finding. This is, however, not straightforward, with a major problem caused by traversing irrelevant shortcuts through highly connected nodes, which correspond to pool metabolites and co-factors (e.g. H2O, NADP and H+). In this study, we present a web server implementing two simple approaches, which circumvent this problem, thereby improving the relevance of the inferred pathways. In the simplest approach, the shortest path is computed, while filtering out the selection of highly connected compounds. In the second approach, the shortest path is computed on the weighted metabolic graph where each compound is assigned a weight equal to its connectivity in the network. This approach significantly increases the accuracy of the inferred pathways, enabling the correct inference of relatively long pathways (e.g. with as many as eight intermediate reactions). Available options include the calculation of the k-shortest paths between two specified seed nodes (either compounds or reactions). Multiple requests can be submitted in a queue. Results are returned by email, in textual as well as graphical formats (available in http://www.scmbb.ulb.ac.be/pathfinding/)." @default.
• W2133319394 created "2016-06-24" @default.
• W2133319394 creator A5028394436 @default.
• W2133319394 creator A5034771876 @default.
• W2133319394 creator A5056821549 @default.
• W2133319394 creator A5080667599 @default.
• W2133319394 date "2005-07-01" @default.
• W2133319394 modified "2023-09-30" @default.
• W2133319394 title "Metabolic PathFinding: inferring relevant pathways in biochemical networks" @default.
• W2133319394 cites W1524662923 @default.
• W2133319394 cites W1598572316 @default.
• W2133319394 cites W1976672440 @default.
• W2133319394 cites W1983202741 @default.
• W2133319394 cites W2031566655 @default.
• W2133319394 cites W2047496194 @default.
• W2133319394 cites W2054661806 @default.
• W2133319394 cites W2082344308 @default.
• W2133319394 cites W2099039198 @default.
• W2133319394 cites W2100083453 @default.
• W2133319394 cites W2107903949 @default.
• W2133319394 cites W2140000393 @default.
• W2133319394 cites W2159482845 @default.
• W2133319394 cites W4230932396 @default.
• W2133319394 doi "https://doi.org/10.1093/nar/gki437" @default.
• W2133319394 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/1160198" @default.
• W2133319394 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/15980483" @default.
• W2133319394 hasPublicationYear "2005" @default.
• W2133319394 type Work @default.
• W2133319394 sameAs 2133319394 @default.
• W2133319394 citedByCount "90" @default.
• W2133319394 countsByYear W21333193942012 @default.
• W2133319394 countsByYear W21333193942013 @default.
• W2133319394 countsByYear W21333193942014 @default.
• W2133319394 countsByYear W21333193942015 @default.
• W2133319394 countsByYear W21333193942016 @default.
• W2133319394 countsByYear W21333193942017 @default.
• W2133319394 countsByYear W21333193942018 @default.
• W2133319394 countsByYear W21333193942019 @default.
• W2133319394 countsByYear W21333193942020 @default.
• W2133319394 countsByYear W21333193942021 @default.
• W2133319394 crossrefType "journal-article" @default.
• W2133319394 hasAuthorship W2133319394A5028394436 @default.
• W2133319394 hasAuthorship W2133319394A5034771876 @default.
• W2133319394 hasAuthorship W2133319394A5056821549 @default.
• W2133319394 hasAuthorship W2133319394A5080667599 @default.
• W2133319394 hasBestOaLocation W21333193941 @default.
• W2133319394 hasConcept C101810790 @default.
• W2133319394 hasConcept C104317684 @default.
• W2133319394 hasConcept C114614502 @default.
• W2133319394 hasConcept C132525143 @default.
• W2133319394 hasConcept C13280743 @default.
• W2133319394 hasConcept C154945302 @default.
• W2133319394 hasConcept C158154518 @default.
• W2133319394 hasConcept C176809094 @default.
• W2133319394 hasConcept C17744445 @default.
• W2133319394 hasConcept C192989942 @default.
• W2133319394 hasConcept C199539241 @default.
• W2133319394 hasConcept C205649164 @default.
• W2133319394 hasConcept C22590252 @default.
• W2133319394 hasConcept C25321074 @default.
• W2133319394 hasConcept C2776214188 @default.
• W2133319394 hasConcept C2777735758 @default.
• W2133319394 hasConcept C31258907 @default.
• W2133319394 hasConcept C33923547 @default.
• W2133319394 hasConcept C41008148 @default.
• W2133319394 hasConcept C54355233 @default.
• W2133319394 hasConcept C60644358 @default.
• W2133319394 hasConcept C70721500 @default.
• W2133319394 hasConcept C80444323 @default.
• W2133319394 hasConcept C86803240 @default.
• W2133319394 hasConcept C88230418 @default.
• W2133319394 hasConceptScore W2133319394C101810790 @default.
• W2133319394 hasConceptScore W2133319394C104317684 @default.
• W2133319394 hasConceptScore W2133319394C114614502 @default.
• W2133319394 hasConceptScore W2133319394C132525143 @default.
• W2133319394 hasConceptScore W2133319394C13280743 @default.
• W2133319394 hasConceptScore W2133319394C154945302 @default.
• W2133319394 hasConceptScore W2133319394C158154518 @default.
• W2133319394 hasConceptScore W2133319394C176809094 @default.
• W2133319394 hasConceptScore W2133319394C17744445 @default.
• W2133319394 hasConceptScore W2133319394C192989942 @default.
• W2133319394 hasConceptScore W2133319394C199539241 @default.
• W2133319394 hasConceptScore W2133319394C205649164 @default.
• W2133319394 hasConceptScore W2133319394C22590252 @default.
• W2133319394 hasConceptScore W2133319394C25321074 @default.
• W2133319394 hasConceptScore W2133319394C2776214188 @default.
• W2133319394 hasConceptScore W2133319394C2777735758 @default.
• W2133319394 hasConceptScore W2133319394C31258907 @default.
• W2133319394 hasConceptScore W2133319394C33923547 @default.
• W2133319394 hasConceptScore W2133319394C41008148 @default.
• W2133319394 hasConceptScore W2133319394C54355233 @default.
• W2133319394 hasConceptScore W2133319394C60644358 @default.
• W2133319394 hasConceptScore W2133319394C70721500 @default.
• W2133319394 hasConceptScore W2133319394C80444323 @default.
• W2133319394 hasConceptScore W2133319394C86803240 @default.
• W2133319394 hasConceptScore W2133319394C88230418 @default.
• W2133319394 hasIssue "Web Server" @default.
• W2133319394 hasLocation W21333193941 @default.

• next