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- W2134995081 abstract "MicroRNAs (miRNAs) play important roles in diverse biological processes in plants through the regulation of gene expression. Recently, the plant miRNA* species have been uncovered to possess potential biological functions through target cleavages, which is similar to the miRNAs. By utilizing the publicly available small RNA high-throughput sequencing data, we performed a comprehensive search for the miRNA* sequences on the currently annotated miRNA precursors of apple. This search was based on the secondary structures of miRNA precursors and the accumulation levels of the miRNA* candidates. As a result, 188 miRNA*s were identified on 170 pre-miRNAs in apple. The organ-specific accumulation patterns of the identified miRNA*s were investigated. The result shows that some of the miRNA*s are highly abundant in the apple leaves, roots, flowers or fruits, indicating the potential organ-specific functions of these miRNA*s. Several pieces of literature-based hints were obtained to link the organ-specific accumulation patterns of the miRNA*s to their potential biological roles in organ development. To gain deeper insights into the biological roles of the miRNA*s in apple, degradome sequencing data-based target identification was performed. The result shows that certain miRNA*s possess great potential of performing target cleavage-based regulation of gene expression. Taken together, our study could advance the current understanding on the regulatory activities of the miRNA*s in the non-model plant apple tree." @default.
- W2134995081 created "2016-06-24" @default.
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- W2134995081 date "2014-09-01" @default.
- W2134995081 modified "2023-09-27" @default.
- W2134995081 title "MicroRNA*s in apple (Malus domestica): biological implications obtained from high-throughput sequencing data." @default.
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