FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W2143622432> ?p ?o ?g. }

• W2143622432 abstract "Abstract Background The investigation of extremophile plant species growing in their natural environment offers certain advantages, chiefly that plants adapted to severe habitats have a repertoire of stress tolerance genes that are regulated to maximize plant performance under physiologically challenging conditions. Accordingly, transcriptome sequencing offers a powerful approach to address questions concerning the influence of natural habitat on the physiology of an organism. We used RNA sequencing of Eutrema salsugineum, an extremophile relative of Arabidopsis thaliana , to investigate the extent to which genetic variation and controlled versus natural environments contribute to differences between transcript profiles . Results Using 10 million cDNA reads, we compared transcriptomes from two natural Eutrema accessions (originating from Yukon Territory, Canada and Shandong Province, China) grown under controlled conditions in cabinets and those from Yukon plants collected at a Yukon field site. We assessed the genetic heterogeneity between individuals using single-nucleotide polymorphisms (SNPs) and the expression patterns of 27,016 genes. Over 39,000 SNPs distinguish the Yukon from the Shandong accessions but only 4,475 SNPs differentiated transcriptomes of Yukon field plants from an inbred Yukon line. We found 2,989 genes that were differentially expressed between the three sample groups and multivariate statistical analyses showed that transcriptomes of individual plants from a Yukon field site were as reproducible as those from inbred plants grown under controlled conditions. Predicted functions based upon gene ontology classifications show that the transcriptomes of field plants were enriched by the differential expression of light- and stress-related genes, an observation consistent with the habitat where the plants were found. Conclusion Our expectation that comparative RNA-Seq analysis of transcriptomes from plants originating in natural habitats would be confounded by uncontrolled genetic and environmental factors was not borne out. Moreover, the transcriptome data shows little genetic variation between laboratory Yukon Eutrema plants and those found at a field site. Transcriptomes were reproducible and biological associations meaningful whether plants were grown in cabinets or found in the field. Thus RNA-Seq is a valuable approach to study native plants in natural environments and this technology can be exploited to discover new gene targets for improved crop performance under adverse conditions." @default.
• W2143622432 created "2016-06-24" @default.
• W2143622432 creator A5002868678 @default.
• W2143622432 creator A5004437320 @default.
• W2143622432 creator A5046721087 @default.
• W2143622432 creator A5047864197 @default.
• W2143622432 creator A5052367038 @default.
• W2143622432 creator A5063715947 @default.
• W2143622432 creator A5078161301 @default.
• W2143622432 creator A5085683971 @default.
• W2143622432 creator A5087164904 @default.
• W2143622432 creator A5090392525 @default.
• W2143622432 date "2013-08-28" @default.
• W2143622432 modified "2023-10-14" @default.
• W2143622432 title "RNA-Seq effectively monitors gene expression in Eutrema salsugineum plants growing in an extreme natural habitat and in controlled growth cabinet conditions" @default.
• W2143622432 cites W1964653107 @default.
• W2143622432 cites W1971899779 @default.
• W2143622432 cites W1973564485 @default.
• W2143622432 cites W1973601901 @default.
• W2143622432 cites W1984110141 @default.
• W2143622432 cites W1987545661 @default.
• W2143622432 cites W1996783504 @default.
• W2143622432 cites W1999948884 @default.
• W2143622432 cites W2002631115 @default.
• W2143622432 cites W2002900187 @default.
• W2143622432 cites W2006695538 @default.
• W2143622432 cites W2009791735 @default.
• W2143622432 cites W2020541351 @default.
• W2143622432 cites W2028189102 @default.
• W2143622432 cites W2034617842 @default.
• W2143622432 cites W2035864960 @default.
• W2143622432 cites W2042374500 @default.
• W2143622432 cites W2052541323 @default.
• W2143622432 cites W2053467933 @default.
• W2143622432 cites W2053858933 @default.
• W2143622432 cites W2055770801 @default.
• W2143622432 cites W2056929352 @default.
• W2143622432 cites W2063985242 @default.
• W2143622432 cites W2064627012 @default.
• W2143622432 cites W2067804537 @default.
• W2143622432 cites W2071072823 @default.
• W2143622432 cites W2071347662 @default.
• W2143622432 cites W2073944932 @default.
• W2143622432 cites W2075436975 @default.
• W2143622432 cites W2076210386 @default.
• W2143622432 cites W2078663788 @default.
• W2143622432 cites W2085869131 @default.
• W2143622432 cites W2086372521 @default.
• W2143622432 cites W2095854728 @default.
• W2143622432 cites W2097010091 @default.
• W2143622432 cites W2097186235 @default.
• W2143622432 cites W2098832713 @default.
• W2143622432 cites W2100703845 @default.
• W2143622432 cites W2102619694 @default.
• W2143622432 cites W2104732633 @default.
• W2143622432 cites W2106678197 @default.
• W2143622432 cites W2106993124 @default.
• W2143622432 cites W2107060225 @default.
• W2143622432 cites W2108234281 @default.
• W2143622432 cites W2119180969 @default.
• W2143622432 cites W2120126361 @default.
• W2143622432 cites W2121211805 @default.
• W2143622432 cites W2124816068 @default.
• W2143622432 cites W2129881737 @default.
• W2143622432 cites W2133707124 @default.
• W2143622432 cites W2135230723 @default.
• W2143622432 cites W2136226740 @default.
• W2143622432 cites W2136648420 @default.
• W2143622432 cites W2140320046 @default.
• W2143622432 cites W2141157874 @default.
• W2143622432 cites W2141458291 @default.
• W2143622432 cites W2143173327 @default.
• W2143622432 cites W2149432086 @default.
• W2143622432 cites W2152239989 @default.
• W2143622432 cites W2156866358 @default.
• W2143622432 cites W2157394513 @default.
• W2143622432 cites W2162934206 @default.
• W2143622432 cites W2163131631 @default.
• W2143622432 cites W2164403987 @default.
• W2143622432 cites W2166469005 @default.
• W2143622432 cites W2170532189 @default.
• W2143622432 doi "https://doi.org/10.1186/1471-2164-14-578" @default.
• W2143622432 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/3846481" @default.
• W2143622432 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/23984645" @default.
• W2143622432 hasPublicationYear "2013" @default.
• W2143622432 type Work @default.
• W2143622432 sameAs 2143622432 @default.
• W2143622432 citedByCount "41" @default.
• W2143622432 countsByYear W21436224322014 @default.
• W2143622432 countsByYear W21436224322015 @default.
• W2143622432 countsByYear W21436224322016 @default.
• W2143622432 countsByYear W21436224322017 @default.
• W2143622432 countsByYear W21436224322018 @default.
• W2143622432 countsByYear W21436224322019 @default.
• W2143622432 countsByYear W21436224322020 @default.
• W2143622432 countsByYear W21436224322021 @default.
• W2143622432 crossrefType "journal-article" @default.
• W2143622432 hasAuthorship W2143622432A5002868678 @default.
• W2143622432 hasAuthorship W2143622432A5004437320 @default.
• W2143622432 hasAuthorship W2143622432A5046721087 @default.

• next