FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W2143674927> ?p ?o ?g. }

• W2143674927 abstract "Abstract Background De novo assembly of transcript sequences produced by next-generation sequencing technologies offers a rapid approach to obtain expressed gene sequences for non-model organisms. Ammopiptanthus mongolicus , a super-xerophytic broadleaf evergreen wood, is an ecologically important foundation species in desert ecosystems and exhibits substantial drought tolerance in Mid-Asia desert. Root plays an important role in water absorption of plant. There are insufficient transcriptomic and genomic data in public databases for understanding of the molecular mechanism underlying the drought tolerance of A. mongolicus . Thus, high throughput transcriptome sequencing from A. mongolicus root is helpful to generate a large amount of transcript sequences for gene discovery and molecular marker development. Results A total of 672,002 sequencing reads were obtained from a 454 GS XLR70 Titanium pyrosequencer with a mean length of 279 bp. These reads were assembled into 29,056 unique sequences including 15,173 contigs and 13,883 singlets. In our assembled sequences, 1,827 potential simple sequence repeats (SSR) molecular markers were discovered. Based on sequence similarity with known plant proteins, the assembled sequences represent approximately 9,771 proteins in PlantGDB. Based on the Gene ontology (GO) analysis, hundreds of drought stress-related genes were found. We further analyzed the gene expression profiles of 27 putative genes involved in drought tolerance using quantitative real-time PCR (qRT-PCR) assay. Conclusions Our sequence collection represents a major transcriptomic resource for A. mongolicus , and the large number of genetic markers predicted should contribute to future research in Ammopiptanthus genus. The potential drought stress related transcripts identified in this study provide a good start for further investigation into the drought adaptation in Ammopiptanthus." @default.
• W2143674927 created "2016-06-24" @default.
• W2143674927 creator A5016034793 @default.
• W2143674927 creator A5028625270 @default.
• W2143674927 creator A5029407390 @default.
• W2143674927 creator A5045888758 @default.
• W2143674927 creator A5061838012 @default.
• W2143674927 date "2012-06-21" @default.
• W2143674927 modified "2023-10-09" @default.
• W2143674927 title "De novo sequencing and analysis of root transcriptome using 454 pyrosequencing to discover putative genes associated with drought tolerance in Ammopiptanthus mongolicus" @default.
• W2143674927 cites W1531625140 @default.
• W2143674927 cites W1602584517 @default.
• W2143674927 cites W1960233596 @default.
• W2143674927 cites W1963657604 @default.
• W2143674927 cites W1968569455 @default.
• W2143674927 cites W1975752226 @default.
• W2143674927 cites W1977066389 @default.
• W2143674927 cites W1979115875 @default.
• W2143674927 cites W1980151980 @default.
• W2143674927 cites W1981348283 @default.
• W2143674927 cites W1983657284 @default.
• W2143674927 cites W1988304652 @default.
• W2143674927 cites W1993530962 @default.
• W2143674927 cites W1995877471 @default.
• W2143674927 cites W1998328584 @default.
• W2143674927 cites W1998922290 @default.
• W2143674927 cites W2012986985 @default.
• W2143674927 cites W2022603493 @default.
• W2143674927 cites W2027248859 @default.
• W2143674927 cites W2037210253 @default.
• W2143674927 cites W2045429591 @default.
• W2143674927 cites W2046499052 @default.
• W2143674927 cites W2049996120 @default.
• W2143674927 cites W2052049934 @default.
• W2143674927 cites W2062106924 @default.
• W2143674927 cites W2070622714 @default.
• W2143674927 cites W2080603995 @default.
• W2143674927 cites W2086338036 @default.
• W2143674927 cites W2087265122 @default.
• W2143674927 cites W2087878206 @default.
• W2143674927 cites W2091160917 @default.
• W2143674927 cites W2097095628 @default.
• W2143674927 cites W2097601029 @default.
• W2143674927 cites W2100703845 @default.
• W2143674927 cites W2101688324 @default.
• W2143674927 cites W2102757200 @default.
• W2143674927 cites W2107277218 @default.
• W2143674927 cites W2123405262 @default.
• W2143674927 cites W2129148543 @default.
• W2143674927 cites W2134770471 @default.
• W2143674927 cites W2135230723 @default.
• W2143674927 cites W2142237411 @default.
• W2143674927 cites W2154109695 @default.
• W2143674927 cites W2155745416 @default.
• W2143674927 cites W2158714788 @default.
• W2143674927 cites W2159594972 @default.
• W2143674927 cites W2160164822 @default.
• W2143674927 cites W2160276176 @default.
• W2143674927 cites W2168771710 @default.
• W2143674927 cites W2171661952 @default.
• W2143674927 cites W4294216483 @default.
• W2143674927 doi "https://doi.org/10.1186/1471-2164-13-266" @default.
• W2143674927 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/3407029" @default.
• W2143674927 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/22721448" @default.
• W2143674927 hasPublicationYear "2012" @default.
• W2143674927 type Work @default.
• W2143674927 sameAs 2143674927 @default.
• W2143674927 citedByCount "86" @default.
• W2143674927 countsByYear W21436749272012 @default.
• W2143674927 countsByYear W21436749272013 @default.
• W2143674927 countsByYear W21436749272014 @default.
• W2143674927 countsByYear W21436749272015 @default.
• W2143674927 countsByYear W21436749272016 @default.
• W2143674927 countsByYear W21436749272017 @default.
• W2143674927 countsByYear W21436749272018 @default.
• W2143674927 countsByYear W21436749272019 @default.
• W2143674927 countsByYear W21436749272020 @default.
• W2143674927 countsByYear W21436749272021 @default.
• W2143674927 countsByYear W21436749272022 @default.
• W2143674927 countsByYear W21436749272023 @default.
• W2143674927 crossrefType "journal-article" @default.
• W2143674927 hasAuthorship W2143674927A5016034793 @default.
• W2143674927 hasAuthorship W2143674927A5028625270 @default.
• W2143674927 hasAuthorship W2143674927A5029407390 @default.
• W2143674927 hasAuthorship W2143674927A5045888758 @default.
• W2143674927 hasAuthorship W2143674927A5061838012 @default.
• W2143674927 hasBestOaLocation W21436749271 @default.
• W2143674927 hasConcept C104317684 @default.
• W2143674927 hasConcept C106337198 @default.
• W2143674927 hasConcept C125009961 @default.
• W2143674927 hasConcept C141231307 @default.
• W2143674927 hasConcept C149034497 @default.
• W2143674927 hasConcept C150194340 @default.
• W2143674927 hasConcept C162317418 @default.
• W2143674927 hasConcept C18949551 @default.
• W2143674927 hasConcept C189797535 @default.
• W2143674927 hasConcept C50489715 @default.
• W2143674927 hasConcept C51679486 @default.
• W2143674927 hasConcept C54355233 @default.
• W2143674927 hasConcept C59582021 @default.

• next