FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W2145264699> ?p ?o ?g. }

• W2145264699 abstract "Abstract Background In the scientific biodiversity community, it is increasingly perceived the need to build a bridge between molecular and traditional biodiversity studies. We believe that the information technology could have a preeminent role in integrating the information generated by these studies with the large amount of molecular data we can find in bioinformatics public databases. This work is primarily aimed at building a bioinformatic infrastructure for the integration of public and private biodiversity data through the development of GIDL, an Intelligent Data Loader coupled with the Molecular Biodiversity Database. The system presented here organizes in an ontological way and locally stores the sequence and annotation data contained in the GenBank primary database. Methods The GIDL architecture consists of a relational database and of an intelligent data loader software. The relational database schema is designed to manage biodiversity information (Molecular Biodiversity Database) and it is organized in four areas: MolecularData, Experiment, Collection and Taxonomy. The MolecularData area is inspired to an established standard in Generic Model Organism Databases, the Chado relational schema. The peculiarity of Chado, and also its strength, is the adoption of an ontological schema which makes use of the Sequence Ontology. The Intelligent Data Loader (IDL) component of GIDL is an Extract, Transform and Load software able to parse data, to discover hidden information in the GenBank entries and to populate the Molecular Biodiversity Database. The IDL is composed by three main modules: the Parser, able to parse GenBank flat files; the Reasoner, which automatically builds CLIPS facts mapping the biological knowledge expressed by the Sequence Ontology; the DBFiller, which translates the CLIPS facts into ordered SQL statements used to populate the database. In GIDL Semantic Web technologies have been adopted due to their advantages in data representation, integration and processing. Results and conclusions Entries coming from Virus (814,122), Plant (1,365,360) and Invertebrate (959,065) divisions of GenBank rel.180 have been loaded in the Molecular Biodiversity Database by GIDL. Our system, combining the Sequence Ontology and the Chado schema, allows a more powerful query expressiveness compared with the most commonly used sequence retrieval systems like Entrez or SRS." @default.
• W2145264699 created "2016-06-24" @default.
• W2145264699 creator A5027698019 @default.
• W2145264699 creator A5044640697 @default.
• W2145264699 creator A5045977416 @default.
• W2145264699 creator A5052061468 @default.
• W2145264699 creator A5053123039 @default.
• W2145264699 creator A5058631488 @default.
• W2145264699 creator A5081898622 @default.
• W2145264699 creator A5082373890 @default.
• W2145264699 creator A5090302917 @default.
• W2145264699 date "2012-03-28" @default.
• W2145264699 modified "2023-10-09" @default.
• W2145264699 title "GIDL: a rule based expert system for GenBank Intelligent Data Loading into the Molecular Biodiversity database" @default.
• W2145264699 cites W1835571316 @default.
• W2145264699 cites W2035791470 @default.
• W2145264699 cites W2075610412 @default.
• W2145264699 cites W2078420731 @default.
• W2145264699 cites W2112589398 @default.
• W2145264699 cites W2113142309 @default.
• W2145264699 cites W2117077912 @default.
• W2145264699 cites W2117984499 @default.
• W2145264699 cites W2123171788 @default.
• W2145264699 cites W2125816119 @default.
• W2145264699 cites W2151397621 @default.
• W2145264699 cites W2161661053 @default.
• W2145264699 cites W2168507922 @default.
• W2145264699 cites W3121953277 @default.
• W2145264699 cites W4230606671 @default.
• W2145264699 cites W4241347156 @default.
• W2145264699 cites W4244606935 @default.
• W2145264699 doi "https://doi.org/10.1186/1471-2105-13-s4-s4" @default.
• W2145264699 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/3303717" @default.
• W2145264699 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/22536971" @default.
• W2145264699 hasPublicationYear "2012" @default.
• W2145264699 type Work @default.
• W2145264699 sameAs 2145264699 @default.
• W2145264699 citedByCount "8" @default.
• W2145264699 countsByYear W21452646992012 @default.
• W2145264699 countsByYear W21452646992014 @default.
• W2145264699 countsByYear W21452646992015 @default.
• W2145264699 countsByYear W21452646992016 @default.
• W2145264699 crossrefType "journal-article" @default.
• W2145264699 hasAuthorship W2145264699A5027698019 @default.
• W2145264699 hasAuthorship W2145264699A5044640697 @default.
• W2145264699 hasAuthorship W2145264699A5045977416 @default.
• W2145264699 hasAuthorship W2145264699A5052061468 @default.
• W2145264699 hasAuthorship W2145264699A5053123039 @default.
• W2145264699 hasAuthorship W2145264699A5058631488 @default.
• W2145264699 hasAuthorship W2145264699A5081898622 @default.
• W2145264699 hasAuthorship W2145264699A5082373890 @default.
• W2145264699 hasAuthorship W2145264699A5090302917 @default.
• W2145264699 hasBestOaLocation W21452646991 @default.
• W2145264699 hasConcept C104317684 @default.
• W2145264699 hasConcept C124101348 @default.
• W2145264699 hasConcept C148840519 @default.
• W2145264699 hasConcept C154945302 @default.
• W2145264699 hasConcept C186644900 @default.
• W2145264699 hasConcept C23123220 @default.
• W2145264699 hasConcept C30775581 @default.
• W2145264699 hasConcept C41008148 @default.
• W2145264699 hasConcept C55493867 @default.
• W2145264699 hasConcept C5655090 @default.
• W2145264699 hasConcept C77088390 @default.
• W2145264699 hasConcept C79029880 @default.
• W2145264699 hasConcept C86803240 @default.
• W2145264699 hasConceptScore W2145264699C104317684 @default.
• W2145264699 hasConceptScore W2145264699C124101348 @default.
• W2145264699 hasConceptScore W2145264699C148840519 @default.
• W2145264699 hasConceptScore W2145264699C154945302 @default.
• W2145264699 hasConceptScore W2145264699C186644900 @default.
• W2145264699 hasConceptScore W2145264699C23123220 @default.
• W2145264699 hasConceptScore W2145264699C30775581 @default.
• W2145264699 hasConceptScore W2145264699C41008148 @default.
• W2145264699 hasConceptScore W2145264699C55493867 @default.
• W2145264699 hasConceptScore W2145264699C5655090 @default.
• W2145264699 hasConceptScore W2145264699C77088390 @default.
• W2145264699 hasConceptScore W2145264699C79029880 @default.
• W2145264699 hasConceptScore W2145264699C86803240 @default.
• W2145264699 hasIssue "S4" @default.
• W2145264699 hasLocation W21452646991 @default.
• W2145264699 hasLocation W21452646992 @default.
• W2145264699 hasLocation W21452646993 @default.
• W2145264699 hasLocation W21452646994 @default.
• W2145264699 hasOpenAccess W2145264699 @default.
• W2145264699 hasPrimaryLocation W21452646991 @default.
• W2145264699 hasRelatedWork W1502610062 @default.
• W2145264699 hasRelatedWork W2018151471 @default.
• W2145264699 hasRelatedWork W2044272255 @default.
• W2145264699 hasRelatedWork W2073465565 @default.
• W2145264699 hasRelatedWork W2188578519 @default.
• W2145264699 hasRelatedWork W2512945146 @default.
• W2145264699 hasRelatedWork W279222092 @default.
• W2145264699 hasRelatedWork W2901432962 @default.
• W2145264699 hasRelatedWork W1803138684 @default.
• W2145264699 hasRelatedWork W2591891926 @default.
• W2145264699 hasVolume "13" @default.
• W2145264699 isParatext "false" @default.
• W2145264699 isRetracted "false" @default.
• W2145264699 magId "2145264699" @default.

• next