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- W2146191961 abstract "A simple one-step reverse transcription polymerase chain reaction (RT-PCR) method was developed based on T-rich insertions in the viral genome for simultaneous detection and differentiation of wild type and vaccine strains of Classical swine fever virus (CSFV). The CSFV-specific primers were designed to contain the sequences of the T-rich insertion sites that exist uniquely in the 3' nontranslated regions (3′ NTR) of the genome of lapinized CSFV vaccine strains. By using a one-step RT-PCR or a nested PCR followed by an agarose gel electrophoresis or a multicapillary electrophoresis, the wild-type and lapinized vaccine strains of CSFV in clinical samples could be detected and accurately distinguished. These assays can be applied to at least 3 attenuated lapinized vaccine strains, lapinized Philippines Coronel (LPC), hog cholera lapinized virus (HCLV), and Chinese strain (C strain). The detection limit of the wild-type virus was 6.3 TCID 50 (50% tissue culture infective dose)/ml for RT-PCR and 0.63 TCID 50 /ml for nested PCR. In previous studies, notable T-rich insertions of 12–13 nucleotides (nt) were found in the 3′ NTR of the genome of lapinized vaccine strains of CSFV. However, this study discovered that 2 T-rich insertions, 42 and 36 nt in length, are present in the viral genome of lapinized vaccine strains LPC/PRK (primary rabbit kidney) and LPC/TS (Tam-Sui), respectively. These T-rich insertions of 12, 36, and 42 nt length increases the size of PCR fragments, which are favorable genetic markers for rapid detection of and differentiation between wild-type and different lapinized vaccine strains of CSFV." @default.
- W2146191961 created "2016-06-24" @default.
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- W2146191961 date "2008-07-01" @default.
- W2146191961 modified "2023-09-23" @default.
- W2146191961 title "Rapid Detection and Differentiation of Wild-Type and Three Attenuated Lapinized Vaccine Strains of <i>Classical Swine Fever Virus</i> by Reverse Transcription Polymerase Chain Reaction" @default.
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- W2146191961 doi "https://doi.org/10.1177/104063870802000406" @default.
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