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• W214763 abstract "Glucocorticoid receptor (GR) activation can inhibit breast epithelial and cancer cells from undergoing programmed cell death in response to diverse apoptotic stimuli. Understanding the mechanisms underlying inappropriate cell survival mechanisms is important for treating breast cancer because if we can reverse these mechanisms, therapies designed to kill tumor cells are likely to be more effective. Recently, genome-wide DNA microarrays have provided a glimpse into the signals and interactions within regulatory pathways of the cell. These arrays enable simultaneous measurement of mRNA abundance of most, if not all, identified genes in a genome under different physiological conditions. Currently, two types of microarray experiments are frequently performed in laboratories. The first is a single time point microarray experiment, and the second is a time course microarray experiment. Single time point microarray experiments are effective in identifying genes regulated by a given treatment, e.g., direct target genes of a hormone treatment. However, because molecular pathways are dynamic processes that take place over time, single time point microarray experiments may not allow us to identify dynamic molecular pathways. This problem can be approached by performing a time course microarray experiment, which measures gene expression changes at various time points following a given treatment. In this chapter, we first describe how to identify target genes of a given treatment using a single time point microarray data analysis. We then present three alternate bioinformatics approaches to uncover molecular mechanisms from time course microarray data. Finally, we present a novel bioinformatics approach for analyzing time course microarray data in order to identify novel GR-mediated breast cancer cell survival pathways." @default.
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• W214763 date "2007-12-25" @default.
• W214763 modified "2023-09-25" @default.
• W214763 title "Large-scale DNA Microarray Data Analysis Reveals Glucocorticoid Receptor-mediated Breast Cancer Cell Survival Pathways" @default.
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• W214763 doi "https://doi.org/10.1007/978-1-59745-309-7_9" @default.
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