FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W2155148243> ?p ?o ?g. }

• W2155148243 endingPage "1054" @default.
• W2155148243 startingPage "1047" @default.
• W2155148243 abstract "Abstract Motivation: We present a novel algorithm, MaMF, for identifying transcription factor (TF) binding site motifs. The method is deterministic and depends on an indexing technique to optimize the search process. On common yeast datasets, MaMF performs competitively with other methods. We also present results on a challenging group of eight sets of human genes known to be responsive to a diverse group of TFs. In every case, MaMF finds the annotated motif among the top scoring putative motifs. We compared MaMF against other motif finders on a larger human group of 21 gene sets and found that MaMF performs better than other algorithms. We analyzed the remaining high scoring motifs and show that many correspond to other TFs that are known to co-occur with the annotated TF motifs. The significant and frequent presence of co-occurring transcription factor binding sites explains in part the difficulty of human motif finding. MaMF is a very fast algorithm, suitable for application to large numbers of interesting gene sets. Availability: The software is available for academic research use free of charge by email request. Contact: ajain@jainlab.org Supplemental information: Data comprising the benchmarks used in the paper may be downloaded from ." @default.
• W2155148243 created "2016-06-24" @default.
• W2155148243 creator A5005430934 @default.
• W2155148243 creator A5021143575 @default.
• W2155148243 date "2006-02-02" @default.
• W2155148243 modified "2023-09-23" @default.
• W2155148243 title "A deterministic motif finding algorithm with application to the human genome" @default.
• W2155148243 cites W2003967338 @default.
• W2155148243 cites W2005244073 @default.
• W2155148243 cites W2008120462 @default.
• W2155148243 cites W2016839209 @default.
• W2155148243 cites W2021282293 @default.
• W2155148243 cites W2026726511 @default.
• W2155148243 cites W2028904582 @default.
• W2155148243 cites W2042003013 @default.
• W2155148243 cites W2047923658 @default.
• W2155148243 cites W2055043387 @default.
• W2155148243 cites W2057829817 @default.
• W2155148243 cites W2059578222 @default.
• W2155148243 cites W2084908610 @default.
• W2155148243 cites W2089783852 @default.
• W2155148243 cites W2095617232 @default.
• W2155148243 cites W2096139934 @default.
• W2155148243 cites W2097396311 @default.
• W2155148243 cites W2106004801 @default.
• W2155148243 cites W2121356022 @default.
• W2155148243 cites W2121963546 @default.
• W2155148243 cites W2128937741 @default.
• W2155148243 cites W2135221645 @default.
• W2155148243 cites W2137970956 @default.
• W2155148243 cites W2138717237 @default.
• W2155148243 cites W2140115103 @default.
• W2155148243 cites W2141408320 @default.
• W2155148243 cites W2142446963 @default.
• W2155148243 cites W2144710927 @default.
• W2155148243 cites W2148014281 @default.
• W2155148243 cites W2158962723 @default.
• W2155148243 cites W2160014402 @default.
• W2155148243 cites W2161646573 @default.
• W2155148243 cites W2162142896 @default.
• W2155148243 cites W2164302672 @default.
• W2155148243 cites W2168786813 @default.
• W2155148243 doi "https://doi.org/10.1093/bioinformatics/btl037" @default.
• W2155148243 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/16455748" @default.
• W2155148243 hasPublicationYear "2006" @default.
• W2155148243 type Work @default.
• W2155148243 sameAs 2155148243 @default.
• W2155148243 citedByCount "18" @default.
• W2155148243 countsByYear W21551482432014 @default.
• W2155148243 countsByYear W21551482432015 @default.
• W2155148243 countsByYear W21551482432016 @default.
• W2155148243 countsByYear W21551482432018 @default.
• W2155148243 countsByYear W21551482432019 @default.
• W2155148243 crossrefType "journal-article" @default.
• W2155148243 hasAuthorship W2155148243A5005430934 @default.
• W2155148243 hasAuthorship W2155148243A5021143575 @default.
• W2155148243 hasBestOaLocation W21551482431 @default.
• W2155148243 hasConcept C104317684 @default.
• W2155148243 hasConcept C121332964 @default.
• W2155148243 hasConcept C124101348 @default.
• W2155148243 hasConcept C141231307 @default.
• W2155148243 hasConcept C154945302 @default.
• W2155148243 hasConcept C197077220 @default.
• W2155148243 hasConcept C199360897 @default.
• W2155148243 hasConcept C24890656 @default.
• W2155148243 hasConcept C2777904410 @default.
• W2155148243 hasConcept C32276052 @default.
• W2155148243 hasConcept C41008148 @default.
• W2155148243 hasConcept C54355233 @default.
• W2155148243 hasConcept C70721500 @default.
• W2155148243 hasConcept C75165309 @default.
• W2155148243 hasConcept C86803240 @default.
• W2155148243 hasConceptScore W2155148243C104317684 @default.
• W2155148243 hasConceptScore W2155148243C121332964 @default.
• W2155148243 hasConceptScore W2155148243C124101348 @default.
• W2155148243 hasConceptScore W2155148243C141231307 @default.
• W2155148243 hasConceptScore W2155148243C154945302 @default.
• W2155148243 hasConceptScore W2155148243C197077220 @default.
• W2155148243 hasConceptScore W2155148243C199360897 @default.
• W2155148243 hasConceptScore W2155148243C24890656 @default.
• W2155148243 hasConceptScore W2155148243C2777904410 @default.
• W2155148243 hasConceptScore W2155148243C32276052 @default.
• W2155148243 hasConceptScore W2155148243C41008148 @default.
• W2155148243 hasConceptScore W2155148243C54355233 @default.
• W2155148243 hasConceptScore W2155148243C70721500 @default.
• W2155148243 hasConceptScore W2155148243C75165309 @default.
• W2155148243 hasConceptScore W2155148243C86803240 @default.
• W2155148243 hasIssue "9" @default.
• W2155148243 hasLocation W21551482431 @default.
• W2155148243 hasLocation W21551482432 @default.
• W2155148243 hasOpenAccess W2155148243 @default.
• W2155148243 hasPrimaryLocation W21551482431 @default.
• W2155148243 hasRelatedWork W142583359 @default.
• W2155148243 hasRelatedWork W1603543036 @default.
• W2155148243 hasRelatedWork W1920748419 @default.
• W2155148243 hasRelatedWork W2032217030 @default.
• W2155148243 hasRelatedWork W2062010194 @default.
• W2155148243 hasRelatedWork W2122686110 @default.

• next