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• W2157831257 abstract "We present a stochastic process model for the joint evolution of protein primary and tertiary structure, suitable for use in alignment and estimation of phylogeny. Indels arise from a classic Links model, and mutations follow a standard substitution matrix, whereas backbone atoms diffuse in three-dimensional space according to an Ornstein-Uhlenbeck process. The model allows for simultaneous estimation of evolutionary distances, indel rates, structural drift rates, and alignments, while fully accounting for uncertainty. The inclusion of structural information enables phylogenetic inference on time scales not previously attainable with sequence evolution models. The model also provides a tool for testing evolutionary hypotheses and improving our understanding of protein structural evolution." @default.
• W2157831257 created "2016-06-24" @default.
• W2157831257 creator A5077085817 @default.
• W2157831257 creator A5079169988 @default.
• W2157831257 date "2012-06-21" @default.
• W2157831257 modified "2023-10-14" @default.
• W2157831257 title "A Stochastic Evolutionary Model for Protein Structure Alignment and Phylogeny" @default.
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• W2157831257 doi "https://doi.org/10.1093/molbev/mss167" @default.
• W2157831257 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/3697813" @default.
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