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- W2158778813 abstract "Abstract Summary: The DOMIRE web server implements a novel, automatic, protein structural domain assignment procedure based on 3D substructures of the query protein which are also found within structures of a non-redundant protein database. These common 3D substructures are transformed into a co-occurrence matrix that offers a global view of the protein domain organization. Three different algorithms are employed to define structural domain boundaries from this co-occurrence matrix. For each query, a list of structural neighbors and their alignments are provided. DOMIRE, by displaying the protein structural domain organization, can be a useful tool for defining protein common cores and for unravelling the evolutionary relationship between different proteins. Availability: http://genome.jouy.inra.fr/domire Contact: jean.garnier@jouy.inra.fr" @default.
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- W2158778813 date "2012-02-15" @default.
- W2158778813 modified "2023-09-23" @default.
- W2158778813 title "DOMIRE: a web server for identifying structural domains and their neighbors in proteins" @default.
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- W2158778813 doi "https://doi.org/10.1093/bioinformatics/bts076" @default.
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