FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W2168292723> ?p ?o ?g. }

• W2168292723 endingPage "196" @default.
• W2168292723 startingPage "188" @default.
• W2168292723 abstract "We have developed a portable and easily configurable genome annotation pipeline called MAKER. Its purpose is to allow investigators to independently annotate eukaryotic genomes and create genome databases. MAKER identifies repeats, aligns ESTs and proteins to a genome, produces ab initio gene predictions, and automatically synthesizes these data into gene annotations having evidence-based quality indices. MAKER is also easily trainable: Outputs of preliminary runs are used to automatically retrain its gene-prediction algorithm, producing higher-quality gene-models on subsequent runs. MAKER’s inputs are minimal, and its outputs can be used to create a GMOD database. Its outputs can also be viewed in the Apollo Genome browser; this feature of MAKER provides an easy means to annotate, view, and edit individual contigs and BACs without the overhead of a database. As proof of principle, we have used MAKER to annotate the genome of the planarian Schmidtea mediterranea and to create a new genome database, SmedGD. We have also compared MAKER’s performance to other published annotation pipelines. Our results demonstrate that MAKER provides a simple and effective means to convert a genome sequence into a community-accessible genome database. MAKER should prove especially useful for emerging model organism genome projects for which extensive bioinformatics resources may not be readily available." @default.
• W2168292723 created "2016-06-24" @default.
• W2168292723 creator A5014726459 @default.
• W2168292723 creator A5017968102 @default.
• W2168292723 creator A5039260589 @default.
• W2168292723 creator A5050295401 @default.
• W2168292723 creator A5056967998 @default.
• W2168292723 creator A5061204199 @default.
• W2168292723 creator A5081103189 @default.
• W2168292723 creator A5081619085 @default.
• W2168292723 creator A5084559507 @default.
• W2168292723 date "2007-11-19" @default.
• W2168292723 modified "2023-10-11" @default.
• W2168292723 title "MAKER: An easy-to-use annotation pipeline designed for emerging model organism genomes" @default.
• W2168292723 cites W1484347389 @default.
• W2168292723 cites W1767772592 @default.
• W2168292723 cites W1822105579 @default.
• W2168292723 cites W1909512798 @default.
• W2168292723 cites W1972752128 @default.
• W2168292723 cites W1974119570 @default.
• W2168292723 cites W2069516109 @default.
• W2168292723 cites W2072572526 @default.
• W2168292723 cites W2073915279 @default.
• W2168292723 cites W2077697996 @default.
• W2168292723 cites W2087815309 @default.
• W2168292723 cites W2101786683 @default.
• W2168292723 cites W2106013076 @default.
• W2168292723 cites W2111984642 @default.
• W2168292723 cites W2113000643 @default.
• W2168292723 cites W2122954888 @default.
• W2168292723 cites W2123171788 @default.
• W2168292723 cites W2126452926 @default.
• W2168292723 cites W2127230663 @default.
• W2168292723 cites W2132926880 @default.
• W2168292723 cites W2147499400 @default.
• W2168292723 cites W2148004368 @default.
• W2168292723 cites W2156296160 @default.
• W2168292723 cites W2161745371 @default.
• W2168292723 cites W2164085656 @default.
• W2168292723 cites W2166265186 @default.
• W2168292723 cites W4210400672 @default.
• W2168292723 cites W4213149192 @default.
• W2168292723 cites W4236236547 @default.
• W2168292723 cites W4250052351 @default.
• W2168292723 doi "https://doi.org/10.1101/gr.6743907" @default.
• W2168292723 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/2134774" @default.
• W2168292723 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/18025269" @default.
• W2168292723 hasPublicationYear "2007" @default.
• W2168292723 type Work @default.
• W2168292723 sameAs 2168292723 @default.
• W2168292723 citedByCount "1454" @default.
• W2168292723 countsByYear W21682927232012 @default.
• W2168292723 countsByYear W21682927232013 @default.
• W2168292723 countsByYear W21682927232014 @default.
• W2168292723 countsByYear W21682927232015 @default.
• W2168292723 countsByYear W21682927232016 @default.
• W2168292723 countsByYear W21682927232017 @default.
• W2168292723 countsByYear W21682927232018 @default.
• W2168292723 countsByYear W21682927232019 @default.
• W2168292723 countsByYear W21682927232020 @default.
• W2168292723 countsByYear W21682927232021 @default.
• W2168292723 countsByYear W21682927232022 @default.
• W2168292723 countsByYear W21682927232023 @default.
• W2168292723 crossrefType "journal-article" @default.
• W2168292723 hasAuthorship W2168292723A5014726459 @default.
• W2168292723 hasAuthorship W2168292723A5017968102 @default.
• W2168292723 hasAuthorship W2168292723A5039260589 @default.
• W2168292723 hasAuthorship W2168292723A5050295401 @default.
• W2168292723 hasAuthorship W2168292723A5056967998 @default.
• W2168292723 hasAuthorship W2168292723A5061204199 @default.
• W2168292723 hasAuthorship W2168292723A5081103189 @default.
• W2168292723 hasAuthorship W2168292723A5081619085 @default.
• W2168292723 hasAuthorship W2168292723A5084559507 @default.
• W2168292723 hasBestOaLocation W21682927231 @default.
• W2168292723 hasConcept C104317684 @default.
• W2168292723 hasConcept C105565629 @default.
• W2168292723 hasConcept C141231307 @default.
• W2168292723 hasConcept C189206191 @default.
• W2168292723 hasConcept C199360897 @default.
• W2168292723 hasConcept C2776321320 @default.
• W2168292723 hasConcept C2781148417 @default.
• W2168292723 hasConcept C2908923196 @default.
• W2168292723 hasConcept C41008148 @default.
• W2168292723 hasConcept C43521106 @default.
• W2168292723 hasConcept C54355233 @default.
• W2168292723 hasConcept C70721500 @default.
• W2168292723 hasConcept C77088390 @default.
• W2168292723 hasConcept C86803240 @default.
• W2168292723 hasConcept C89566754 @default.
• W2168292723 hasConceptScore W2168292723C104317684 @default.
• W2168292723 hasConceptScore W2168292723C105565629 @default.
• W2168292723 hasConceptScore W2168292723C141231307 @default.
• W2168292723 hasConceptScore W2168292723C189206191 @default.
• W2168292723 hasConceptScore W2168292723C199360897 @default.
• W2168292723 hasConceptScore W2168292723C2776321320 @default.
• W2168292723 hasConceptScore W2168292723C2781148417 @default.
• W2168292723 hasConceptScore W2168292723C2908923196 @default.
• W2168292723 hasConceptScore W2168292723C41008148 @default.

• next