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• W2169287935 abstract "Reconstructing species trees by incorporating information from many independent gene trees reduces the confounding influence of stochastic lineage sorting. Such analyses are particularly important for taxa that share polymorphisms due to incomplete lineage sorting or introgressive hybridization. We investigated phylogenetic relationships among 14 closely related taxa from the mallard (Anas spp.) complex using the multispecies coalescent and 20 nuclear loci sampled from a genomic transect. We also examined how treating recombining loci and hybridizing species influences results by partitioning the data using various protocols. In general, topologies were similar among the various species trees, with major clades consistently composed of the same taxa. However, relationships among these clades and among taxa within clades changed among partitioned data sets. Posterior support generally decreased when filtering for recombination, whereas excluding mallards (Anas platyrhynchos) increased posterior support for taxa known to hybridize with them. Furthermore, branch lengths decreased substantially for recombination-filtered data. Finally, concordance between nuclear and morphometric topologies conflicted with those in the mitochondrial tree, particularly with regard to the placement of the Hawaiian duck (A. wyvilliana), Philippine duck (A. luzonica), and two spot-billed ducks (A. zonorhyncha and A. poecilorhyncha). These results demonstrate the importance of maximizing sequence length and taxon sampling when inferring taxonomic relationships that are confounded by extensive allele sharing." @default.
• W2169287935 created "2016-06-24" @default.
• W2169287935 creator A5025612892 @default.
• W2169287935 creator A5040463818 @default.
• W2169287935 creator A5047451796 @default.
• W2169287935 date "2014-01-01" @default.
• W2169287935 modified "2023-09-28" @default.
• W2169287935 title "Phylogenetics of a recent radiation in the mallards and allies (Aves: Anas): Inferences from a genomic transect and the multispecies coalescent" @default.
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• W2169287935 doi "https://doi.org/10.1016/j.ympev.2013.08.008" @default.
• W2169287935 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/23994490" @default.
• W2169287935 hasPublicationYear "2014" @default.
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