FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W2169407811> ?p ?o ?g. }

• W2169407811 abstract "Solanum commersonii is a wild potato species that exhibits high tolerance to both biotic and abiotic stresses and has been used as a source of genes for introgression into cultivated potato. Among the interesting features of S. commersonii is resistance to the bacterial wilt caused by Ralstonia solanacearum, one of the most devastating bacterial diseases of crops. In this study, we used deep sequencing of S. commersonii RNA (RNA-seq) to analyze the below-ground plant transcriptional responses to R. solanacearum. While a majority of S. commersonii RNA-seq reads could be aligned to the Solanum tuberosum Group Phureja DM reference genome sequence, we identified 2,978 S. commersonii novel transcripts through assembly of unaligned S. commersonii RNA-seq reads. We also used RNA-seq to study gene expression in pathogen-challenged roots of S. commersonii accessions resistant (F118) and susceptible (F97) to the pathogen. Expression profiles obtained from read mapping to the S. tuberosum reference genome and the S. commersonii novel transcripts revealed a differential response to the pathogen in the two accessions, with 221 (F118) and 644 (F97) differentially expressed genes including S. commersonii novel transcripts in the resistant and susceptible genotypes. Interestingly, 22.6% of the F118 and 12.8% of the F97 differentially expressed genes had been previously identified as responsive to biotic stresses and half of those up-regulated in both accessions had been involved in plant pathogen responses. Finally, we compared two different methods to eliminate ribosomal RNA from the plant RNA samples in order to allow dual mapping of RNAseq reads to the host and pathogen genomes and provide insights on the advantages and limitations of each technique. Our work catalogues the S. commersonii transcriptome and strengthens the notion that this species encodes specific genes that are differentially expressed to respond to bacterial wilt. In addition, a high proportion of S. commersonii-specific transcripts were altered by R. solanacearum only in F118 accession, while phythormone-related genes were highly induced in F97, suggesting a markedly different response to the pathogen in the two plant accessions studied." @default.
• W2169407811 created "2016-06-24" @default.
• W2169407811 creator A5000729864 @default.
• W2169407811 creator A5024906081 @default.
• W2169407811 creator A5025776910 @default.
• W2169407811 creator A5039507659 @default.
• W2169407811 creator A5045742761 @default.
• W2169407811 creator A5051093261 @default.
• W2169407811 creator A5080057531 @default.
• W2169407811 creator A5083590484 @default.
• W2169407811 date "2015-03-26" @default.
• W2169407811 modified "2023-10-08" @default.
• W2169407811 title "Transcriptome responses to Ralstonia solanacearum infection in the roots of the wild potato Solanum commersonii" @default.
• W2169407811 cites W1527927437 @default.
• W2169407811 cites W1545500496 @default.
• W2169407811 cites W1642209043 @default.
• W2169407811 cites W1875904515 @default.
• W2169407811 cites W1964776968 @default.
• W2169407811 cites W1970685754 @default.
• W2169407811 cites W1974981334 @default.
• W2169407811 cites W1980286892 @default.
• W2169407811 cites W1991761020 @default.
• W2169407811 cites W1993416089 @default.
• W2169407811 cites W2005394814 @default.
• W2169407811 cites W2009502812 @default.
• W2169407811 cites W2009529586 @default.
• W2169407811 cites W2010002053 @default.
• W2169407811 cites W2012331775 @default.
• W2169407811 cites W2015291315 @default.
• W2169407811 cites W2022362231 @default.
• W2169407811 cites W2023144535 @default.
• W2169407811 cites W2023994577 @default.
• W2169407811 cites W2033434758 @default.
• W2169407811 cites W2036897871 @default.
• W2169407811 cites W2040125965 @default.
• W2169407811 cites W2051362637 @default.
• W2169407811 cites W2051482167 @default.
• W2169407811 cites W2055043387 @default.
• W2169407811 cites W2058956992 @default.
• W2169407811 cites W2061322293 @default.
• W2169407811 cites W2067863776 @default.
• W2169407811 cites W2071155613 @default.
• W2169407811 cites W2072261294 @default.
• W2169407811 cites W2072605630 @default.
• W2169407811 cites W2076048958 @default.
• W2169407811 cites W2085699671 @default.
• W2169407811 cites W2091448229 @default.
• W2169407811 cites W2092544215 @default.
• W2169407811 cites W2092608042 @default.
• W2169407811 cites W2094254958 @default.
• W2169407811 cites W2097065948 @default.
• W2169407811 cites W2099849055 @default.
• W2169407811 cites W2100806709 @default.
• W2169407811 cites W2101101724 @default.
• W2169407811 cites W2101593458 @default.
• W2169407811 cites W2102920405 @default.
• W2169407811 cites W2105456587 @default.
• W2169407811 cites W2106678197 @default.
• W2169407811 cites W2107493728 @default.
• W2169407811 cites W2108234281 @default.
• W2169407811 cites W2109302467 @default.
• W2169407811 cites W2109892874 @default.
• W2169407811 cites W2122560781 @default.
• W2169407811 cites W2123208777 @default.
• W2169407811 cites W2124984344 @default.
• W2169407811 cites W2124985265 @default.
• W2169407811 cites W2125963417 @default.
• W2169407811 cites W2126728482 @default.
• W2169407811 cites W2132880313 @default.
• W2169407811 cites W2135057380 @default.
• W2169407811 cites W2136136435 @default.
• W2169407811 cites W2141458291 @default.
• W2169407811 cites W2148359970 @default.
• W2169407811 cites W2153756444 @default.
• W2169407811 cites W2154431984 @default.
• W2169407811 cites W2154730620 @default.
• W2169407811 cites W2156362263 @default.
• W2169407811 cites W2156582048 @default.
• W2169407811 cites W2156841387 @default.
• W2169407811 cites W2158288120 @default.
• W2169407811 cites W2160673034 @default.
• W2169407811 cites W2160969485 @default.
• W2169407811 cites W2166226109 @default.
• W2169407811 cites W2166853219 @default.
• W2169407811 cites W2231015460 @default.
• W2169407811 cites W2398869128 @default.
• W2169407811 cites W2471553917 @default.
• W2169407811 doi "https://doi.org/10.1186/s12864-015-1460-1" @default.
• W2169407811 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/4391584" @default.
• W2169407811 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/25880642" @default.
• W2169407811 hasPublicationYear "2015" @default.
• W2169407811 type Work @default.
• W2169407811 sameAs 2169407811 @default.
• W2169407811 citedByCount "59" @default.
• W2169407811 countsByYear W21694078112016 @default.
• W2169407811 countsByYear W21694078112017 @default.
• W2169407811 countsByYear W21694078112018 @default.
• W2169407811 countsByYear W21694078112019 @default.
• W2169407811 countsByYear W21694078112020 @default.
• W2169407811 countsByYear W21694078112021 @default.

• next