FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W2170850874> ?p ?o ?g. }

• W2170850874 endingPage "733" @default.
• W2170850874 startingPage "724" @default.
• W2170850874 abstract "Applying phylogeny-based analyses of trait evolution and diversification in the fossil record generally involves transforming an unscaled cladogram into a phylogeny scaled to geologic time. Current methods produce single time-scaled phylogenies with no indication of the uncertainty in the temporal relationships and, under some methods, artificial zero-length branches. Here, I present a stochastic algorithm for time-scaling phylogenies of fossil taxa by randomly sampling node ages from a constrained distribution, with the ultimate goal of producing large samples of time-scaled phylogenies for a given data set as the basis for phylogeny-based analyses. I describe how this stochastic approach can be extended to consider potential ancestral relationships and resolve polytomies. The stochastic selection of node ages in this algorithm is weighted by the probability density of the total inferable unobserved evolutionary history at single divergence events in a tree, a distribution dependent on rates of branching, extinction and sampling in the fossil record. The combined time-scaling method must be calibrated with explicit estimates of three rates: branching, extinction and sampling, and thus is named the cal3 time-scaling method, included in the r library paleotree. I test the time-scaling capabilities of the cal3 and older time-scaling methods in simulations. cal3 produces samples of time-scaled trees that better bracket the uncertainty in the true node ages than existing time-scaling methods. This is true even in simulations under a ‘terminal-taxon’ model of differentiation that violates many of the assumptions of the cal3 method. The cal3 method provides a new approach for time-scaling palaeontological cladograms, calibrated to estimated sampling and diversification rates, allowing for better estimates of uncertainty in the phylogenetic time-scaling. The cal3 method is robust to relaxation of at least some model assumptions. Additional work is needed to analyse the impact of time-scaling approaches on macroevolutionary analyses and to integrate time-scaling with phylogenetic inference." @default.
• W2170850874 created "2016-06-24" @default.
• W2170850874 creator A5070517284 @default.
• W2170850874 date "2013-08-01" @default.
• W2170850874 modified "2023-10-11" @default.
• W2170850874 title "A stochastic rate-calibrated method for time-scaling phylogenies of fossil taxa" @default.
• W2170850874 cites W1563549865 @default.
• W2170850874 cites W1614214072 @default.
• W2170850874 cites W1735656240 @default.
• W2170850874 cites W1802736723 @default.
• W2170850874 cites W1974698245 @default.
• W2170850874 cites W1996458817 @default.
• W2170850874 cites W2007593785 @default.
• W2170850874 cites W2030637789 @default.
• W2170850874 cites W2051714097 @default.
• W2170850874 cites W2051801987 @default.
• W2170850874 cites W2071665653 @default.
• W2170850874 cites W2073635400 @default.
• W2170850874 cites W2073735775 @default.
• W2170850874 cites W2101107494 @default.
• W2170850874 cites W2104579758 @default.
• W2170850874 cites W2108056819 @default.
• W2170850874 cites W2115892010 @default.
• W2170850874 cites W2132994862 @default.
• W2170850874 cites W2146368901 @default.
• W2170850874 cites W2150769487 @default.
• W2170850874 cites W2151409320 @default.
• W2170850874 cites W2152730370 @default.
• W2170850874 cites W2159597448 @default.
• W2170850874 cites W2160525739 @default.
• W2170850874 cites W2167709329 @default.
• W2170850874 cites W2173067401 @default.
• W2170850874 cites W2467120293 @default.
• W2170850874 cites W2482356112 @default.
• W2170850874 cites W4234595868 @default.
• W2170850874 cites W4244814634 @default.
• W2170850874 doi "https://doi.org/10.1111/2041-210x.12081" @default.
• W2170850874 hasPublicationYear "2013" @default.
• W2170850874 type Work @default.
• W2170850874 sameAs 2170850874 @default.
• W2170850874 citedByCount "105" @default.
• W2170850874 countsByYear W21708508742013 @default.
• W2170850874 countsByYear W21708508742014 @default.
• W2170850874 countsByYear W21708508742015 @default.
• W2170850874 countsByYear W21708508742016 @default.
• W2170850874 countsByYear W21708508742017 @default.
• W2170850874 countsByYear W21708508742018 @default.
• W2170850874 countsByYear W21708508742019 @default.
• W2170850874 countsByYear W21708508742020 @default.
• W2170850874 countsByYear W21708508742021 @default.
• W2170850874 countsByYear W21708508742022 @default.
• W2170850874 countsByYear W21708508742023 @default.
• W2170850874 crossrefType "journal-article" @default.
• W2170850874 hasAuthorship W2170850874A5070517284 @default.
• W2170850874 hasBestOaLocation W21708508741 @default.
• W2170850874 hasConcept C101991246 @default.
• W2170850874 hasConcept C105795698 @default.
• W2170850874 hasConcept C106131492 @default.
• W2170850874 hasConcept C140779682 @default.
• W2170850874 hasConcept C151730666 @default.
• W2170850874 hasConcept C2524010 @default.
• W2170850874 hasConcept C31972630 @default.
• W2170850874 hasConcept C33923547 @default.
• W2170850874 hasConcept C41008148 @default.
• W2170850874 hasConcept C86803240 @default.
• W2170850874 hasConcept C99844830 @default.
• W2170850874 hasConceptScore W2170850874C101991246 @default.
• W2170850874 hasConceptScore W2170850874C105795698 @default.
• W2170850874 hasConceptScore W2170850874C106131492 @default.
• W2170850874 hasConceptScore W2170850874C140779682 @default.
• W2170850874 hasConceptScore W2170850874C151730666 @default.
• W2170850874 hasConceptScore W2170850874C2524010 @default.
• W2170850874 hasConceptScore W2170850874C31972630 @default.
• W2170850874 hasConceptScore W2170850874C33923547 @default.
• W2170850874 hasConceptScore W2170850874C41008148 @default.
• W2170850874 hasConceptScore W2170850874C86803240 @default.
• W2170850874 hasConceptScore W2170850874C99844830 @default.
• W2170850874 hasIssue "8" @default.
• W2170850874 hasLocation W21708508741 @default.
• W2170850874 hasOpenAccess W2170850874 @default.
• W2170850874 hasPrimaryLocation W21708508741 @default.
• W2170850874 hasRelatedWork W1980905932 @default.
• W2170850874 hasRelatedWork W2051454973 @default.
• W2170850874 hasRelatedWork W2066157660 @default.
• W2170850874 hasRelatedWork W2083542484 @default.
• W2170850874 hasRelatedWork W2119158312 @default.
• W2170850874 hasRelatedWork W2330407128 @default.
• W2170850874 hasRelatedWork W2552050053 @default.
• W2170850874 hasRelatedWork W2969635709 @default.
• W2170850874 hasRelatedWork W3037784022 @default.
• W2170850874 hasRelatedWork W4234996786 @default.
• W2170850874 hasVolume "4" @default.
• W2170850874 isParatext "false" @default.
• W2170850874 isRetracted "false" @default.
• W2170850874 magId "2170850874" @default.
• W2170850874 workType "article" @default.