FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W2171259901> ?p ?o ?g. }

• W2171259901 endingPage "47" @default.
• W2171259901 startingPage "40" @default.
• W2171259901 abstract "Abstract Motivation : Insertion/deletion (indel) and amino acid substitution are two common events that lead to the evolution of and variations in protein sequences. Further, many of the human diseases and functional divergence between homologous proteins are more related to indel mutations, even though they occur less often than the substitution mutations do. A reliable identification of indels and their flanking regions is a major challenge in research related to protein evolution, structures and functions. Results : In this article, we propose a novel scheme to predict indel flanking regions in a protein sequence for a given protein fold, based on a variable-order Markov model. The proposed indel flanking region (IndelFR) predictors are designed based on prediction by partial match (PPM) and probabilistic suffix tree (PST), which are referred to as the PPM IndelFR and PST IndelFR predictors, respectively. The overall performance evaluation results show that the proposed predictors are able to predict IndelFRs in the protein sequences with a high accuracy and F1 measure. In addition, the results show that if one is interested only in predicting IndelFRs in protein sequences, it would be preferable to use the proposed predictors instead of HMMER 3.0 in view of the substantially superior performance of the former. Contact : m_alshat@ece.concordia.ca or omair@ece.concordia.ca or swamy@ece.concordia.ca . Supplementary information: Supplementary data are available at Bioinformatics online." @default.
• W2171259901 created "2016-06-24" @default.
• W2171259901 creator A5013967994 @default.
• W2171259901 creator A5050636829 @default.
• W2171259901 creator A5091389224 @default.
• W2171259901 date "2014-08-31" @default.
• W2171259901 modified "2023-09-27" @default.
• W2171259901 title "Prediction of Indel flanking regions in protein sequences using a variable-order Markov model" @default.
• W2171259901 cites W1979486483 @default.
• W2171259901 cites W1981575795 @default.
• W2171259901 cites W2011485152 @default.
• W2171259901 cites W2018248334 @default.
• W2171259901 cites W2019572077 @default.
• W2171259901 cites W2049268173 @default.
• W2171259901 cites W2051873396 @default.
• W2171259901 cites W2067657048 @default.
• W2171259901 cites W2093169207 @default.
• W2171259901 cites W2102122585 @default.
• W2171259901 cites W2103533532 @default.
• W2171259901 cites W2128613007 @default.
• W2171259901 cites W2128653811 @default.
• W2171259901 cites W2129995544 @default.
• W2171259901 cites W2133657429 @default.
• W2171259901 cites W2135621733 @default.
• W2171259901 cites W2135771747 @default.
• W2171259901 cites W2139814676 @default.
• W2171259901 cites W2140244239 @default.
• W2171259901 cites W2143292980 @default.
• W2171259901 cites W2151831732 @default.
• W2171259901 cites W2158698691 @default.
• W2171259901 cites W2160708989 @default.
• W2171259901 cites W2161628678 @default.
• W2171259901 cites W2163294786 @default.
• W2171259901 cites W2163304934 @default.
• W2171259901 cites W2164698543 @default.
• W2171259901 cites W3104314953 @default.
• W2171259901 cites W4234588445 @default.
• W2171259901 cites W4320301318 @default.
• W2171259901 doi "https://doi.org/10.1093/bioinformatics/btu556" @default.
• W2171259901 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/25178462" @default.
• W2171259901 hasPublicationYear "2014" @default.
• W2171259901 type Work @default.
• W2171259901 sameAs 2171259901 @default.
• W2171259901 citedByCount "5" @default.
• W2171259901 countsByYear W21712599012012 @default.
• W2171259901 countsByYear W21712599012015 @default.
• W2171259901 countsByYear W21712599012018 @default.
• W2171259901 countsByYear W21712599012021 @default.
• W2171259901 countsByYear W21712599012022 @default.
• W2171259901 crossrefType "journal-article" @default.
• W2171259901 hasAuthorship W2171259901A5013967994 @default.
• W2171259901 hasAuthorship W2171259901A5050636829 @default.
• W2171259901 hasAuthorship W2171259901A5091389224 @default.
• W2171259901 hasBestOaLocation W21712599011 @default.
• W2171259901 hasConcept C104317684 @default.
• W2171259901 hasConcept C116834253 @default.
• W2171259901 hasConcept C119054055 @default.
• W2171259901 hasConcept C119857082 @default.
• W2171259901 hasConcept C135763542 @default.
• W2171259901 hasConcept C153209595 @default.
• W2171259901 hasConcept C154945302 @default.
• W2171259901 hasConcept C163836022 @default.
• W2171259901 hasConcept C166957645 @default.
• W2171259901 hasConcept C167625842 @default.
• W2171259901 hasConcept C178180057 @default.
• W2171259901 hasConcept C23224414 @default.
• W2171259901 hasConcept C2778112365 @default.
• W2171259901 hasConcept C2910714999 @default.
• W2171259901 hasConcept C41008148 @default.
• W2171259901 hasConcept C45484198 @default.
• W2171259901 hasConcept C501734568 @default.
• W2171259901 hasConcept C54355233 @default.
• W2171259901 hasConcept C59822182 @default.
• W2171259901 hasConcept C70721500 @default.
• W2171259901 hasConcept C75728560 @default.
• W2171259901 hasConcept C86803240 @default.
• W2171259901 hasConcept C88031987 @default.
• W2171259901 hasConcept C95457728 @default.
• W2171259901 hasConcept C98763669 @default.
• W2171259901 hasConceptScore W2171259901C104317684 @default.
• W2171259901 hasConceptScore W2171259901C116834253 @default.
• W2171259901 hasConceptScore W2171259901C119054055 @default.
• W2171259901 hasConceptScore W2171259901C119857082 @default.
• W2171259901 hasConceptScore W2171259901C135763542 @default.
• W2171259901 hasConceptScore W2171259901C153209595 @default.
• W2171259901 hasConceptScore W2171259901C154945302 @default.
• W2171259901 hasConceptScore W2171259901C163836022 @default.
• W2171259901 hasConceptScore W2171259901C166957645 @default.
• W2171259901 hasConceptScore W2171259901C167625842 @default.
• W2171259901 hasConceptScore W2171259901C178180057 @default.
• W2171259901 hasConceptScore W2171259901C23224414 @default.
• W2171259901 hasConceptScore W2171259901C2778112365 @default.
• W2171259901 hasConceptScore W2171259901C2910714999 @default.
• W2171259901 hasConceptScore W2171259901C41008148 @default.
• W2171259901 hasConceptScore W2171259901C45484198 @default.
• W2171259901 hasConceptScore W2171259901C501734568 @default.
• W2171259901 hasConceptScore W2171259901C54355233 @default.
• W2171259901 hasConceptScore W2171259901C59822182 @default.

• next