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• W2180232428 abstract "We introduce Pyvolve, a flexible Python module for simulating genetic data along a phylogeny using continuous-time Markov models of sequence evolution. Easily incorporated into Python bioinformatics pipelines, Pyvolve can simulate sequences according to most standard models of nucleotide, amino-acid, and codon sequence evolution. All model parameters are fully customizable. Users can additionally specify custom evolutionary models, with custom rate matrices and/or states to evolve. This flexibility makes Pyvolve a convenient framework not only for simulating sequences under a wide variety of conditions, but also for developing and testing new evolutionary models. Pyvolve is an open-source project under a FreeBSD license, and it is available for download, along with a detailed user-manual and example scripts, from http://github.com/sjspielman/pyvolve." @default.
• W2180232428 created "2016-06-24" @default.
• W2180232428 creator A5029841589 @default.
• W2180232428 creator A5070411498 @default.
• W2180232428 date "2015-06-01" @default.
• W2180232428 modified "2023-09-28" @default.
• W2180232428 title "Pyvolve: a flexible Python module for simulating sequences along phylogenies" @default.
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• W2180232428 doi "https://doi.org/10.1101/020214" @default.
• W2180232428 hasPublicationYear "2015" @default.
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