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• W2209510499 abstract "Synonymous codon usage bias (CUB) is a defined as the non-random usage of codons encoding the same amino acid across different genomes. This phenomenon is common to all organisms and the real weight of the many factors involved in its shaping still remains to be fully determined. So far, relatively little attention has been put in the analysis of CUB in bivalve mollusks due to the limited genomic data available. Taking advantage of the massive sequence data generated from next generation sequencing projects, we explored codon preferences in 64 different species pertaining to the six major evolutionary lineages in Bivalvia. We detected remarkable differences across species, which are only partially dependent on phylogeny. While the intensity of CUB is mild in most organisms, a heterogeneous group of species (including Arcida and Mytilida, among the others) display higher bias and a strong preference for AT-ending codons. We show that the relative strength and direction of mutational bias, selection for translational efficiency and for translational accuracy contribute to the establishment of synonymous codon usage in bivalves. Although many aspects underlying bivalve CUB still remain obscure, we provide for the first time an overview of this phenomenon in this large, commercially and environmentally important, class of marine invertebrates." @default.
• W2209510499 created "2016-06-24" @default.
• W2209510499 creator A5016355294 @default.
• W2209510499 creator A5024482701 @default.
• W2209510499 creator A5036392113 @default.
• W2209510499 creator A5049654977 @default.
• W2209510499 date "2015-12-14" @default.
• W2209510499 modified "2023-09-25" @default.
• W2209510499 title "Analysis of synonymous codon usage patterns in sixty-four different bivalve species" @default.
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• W2209510499 doi "https://doi.org/10.7717/peerj.1520" @default.
• W2209510499 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/4690358" @default.
• W2209510499 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/26713259" @default.
• W2209510499 hasPublicationYear "2015" @default.
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