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- W2233253752 abstract "Atomic-level molecular dynamic simulations are capable of fully folding structurally diverse proteins; however, they are limited in their ability to accurately represent electrostatic interactions. Here we have experimentally tested the role of charged residues on stability and folding kinetics of one of the most widely simulated β-proteins, the WW domain. The folding of wild type Pin1 WW domain, which has two positively charged residues in the first turn, was compared to the fast folding mutant FiP35 Pin1, which introduces a negative charge into the first turn. A combination of FTIR spectroscopy and laser-induced temperature-jump coupled with infrared spectroscopy was used to probe changes in the amide I region. The relaxation dynamics of the peptide backbone, β-sheets and β-turns, and negatively charged aspartic acid side chain of FiP35 were measured independently by probing the corresponding bands assigned in the amide I region. Folding is initiated in the turns and the β-sheets form last. While the global folding mechanism is in good agreement with simulation predictions, we observe changes in the protonation state of aspartic acid during folding that have not been captured by simulation methods. The protonation state of aspartic acid is coupled to protein folding; the apparent pKa of aspartic acid in the folded protein is 6.4. The dynamics of the aspartic acid follow the dynamics of the intermediate phase, supporting assignment of this phase to formation of the first hairpin. These results demonstrate the importance of electrostatic interactions in turn stability and formation of extended β-sheet structures." @default.
- W2233253752 created "2016-06-24" @default.
- W2233253752 creator A5034101678 @default.
- W2233253752 creator A5065643040 @default.
- W2233253752 date "2016-01-20" @default.
- W2233253752 modified "2023-10-16" @default.
- W2233253752 title "The Role of Electrostatic Interactions in Folding of β-Proteins" @default.
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- W2233253752 doi "https://doi.org/10.1021/jacs.5b13201" @default.
- W2233253752 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/4749129" @default.
- W2233253752 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/26750867" @default.
- W2233253752 hasPublicationYear "2016" @default.
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