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• W2282872450 abstract "HomePlant DiseaseVol. 100, No. 6First Report of the Stubby Root Nematode Paratrichodorus allius on Potato in North Dakota PreviousNext DISEASE NOTES OPENOpen Access licenseFirst Report of the Stubby Root Nematode Paratrichodorus allius on Potato in North DakotaG. P. Yan, A. Plaisance, D. Huang, A. Upadhaya, N. C. Gudmestad, and Z. A. HandooG. P. YanSearch for more papers by this author, A. PlaisanceSearch for more papers by this author, D. HuangSearch for more papers by this author, A. UpadhayaSearch for more papers by this author, N. C. GudmestadSearch for more papers by this author, and Z. A. HandooSearch for more papers by this authorAffiliationsAuthors and Affiliations G. P. Yan A. Plaisance D. Huang A. Upadhaya N. C. Gudmestad , North Dakota State University, Department of Plant Pathology, Fargo, ND 58108-6050 Z. A. Handoo , USDA-ARS, Nematology Laboratory, Beltsville, MD 20705. Published Online:18 Mar 2016https://doi.org/10.1094/PDIS-11-15-1350-PDNAboutSections ToolsAdd to favoritesDownload CitationsTrack Citations ShareShare onFacebookTwitterLinked InRedditEmailWechat Stubby root nematodes (Paratrichodorus and Trichodorus) are migratory ectoparasites that feed on roots and vector tobraviruses (Riga et al. 2007). They are important to the potato industry as they transmit Tobacco rattle virus (TRV) causing corky ringspot disease, which has a direct economic impact on growers due to abandonment or rejection by processing or fresh markets (Charlton et al. 2010). TRV associated with corky ringspot on potato in North Dakota was reported but stubby root nematodes (SRN) were not investigated (David et al. 2010). In October 2014, three soil samples were collected from a potato field in Sargent Co., ND, to determine the occurrence of SRN. Most of the field was harvested but a portion of the field was abandoned due to 80 to 90% of the tubers (cv. Milva) exhibiting the typical brown necrotic ring, arc, and spot symptoms of corky ringspot. Diseased tubers from this field were tested and found to be infected with TRV. Nematodes were extracted from soil using sugar centrifugal flotation and one of the samples was found to contain SRN (44/kg soil). In April 2015, 49 soil samples were collected from the same field and seven of the samples had SRN with population densities ranging from 135 to 300 (mean = 175) per kg of soil. Nematodes were examined morphologically and molecularly for species identification. Morphological measurements of adult females (n = 10) included body length (range = 550.0 to 690.0 μm, mean = 606.8 μm), onchiostyle (40.0 to 47.5, 43.9), body width (35.0 to 58.0, 42.3), anterior end to basal bulb (90.0 to 150.0, 114.7), a (10.3 to 18.6, 14.7), b (4.0 to 6.7, 5.3), and V (50.0 to 60.0%, 53.8%). The anus and caudal pores were subterminal. The nematode species was identified as P. allius (Jensen 1963) Siddiqi, 1974, by morphological and morphometric characteristics (Decraemer 1980). DNA was extracted from single nematodes (n = 7) isolated from three soil samples in 20 μl of extraction buffer. The D2/D3 region of 28S rRNA, partial 18S rRNA, and ITS1 rDNA were amplified with primer pairs D2A/D3B, SSUF07/SSUR26, and BL18/5818, respectively (Ye et al. 2015; Riga et al. 2007). PCR products were cloned using pGEM-T easy vector and sequenced. Since sequences from all samples for each genomic region were identical, only one of the sequences from that region was submitted to GenBank and therefore represents a consensus sequence. The 18S rRNA sequence (GenBank Accession No. KU094058, 919 bp) was 100% identical to one population of P. allius (AJ439572) from Washington, 99% identical to P. teres, a closely related species of P. allius, and less than 99% identical to other Paratrichodorus spp. The ITS1 rDNA sequence (KU094059, 832 bp) was 99% homologous with two populations of P. allius from North Carolina (KJ934124) and Washington (AM087124), but had no significant similarity with P. teres and other Paratrichodorus spp. The 28S D2/D3 sequence (KU094057, 799 bp) was 91% or less homologous with P. teres and other Paratrichodorus spp., but no P. allius sequence was available for comparison. The molecular tests confirmed the identity as P. allius. P. allius is known to be the most prevalent vector of TRV in Washington and Oregon (Riga et al. 2007). To our knowledge, this is the first report of P. allius in North Dakota.References:Charlton, B. A., et al. 2010. J. Nematol. 42:1. ISI, Google ScholarDavid, N., et al. 2010. Plant Dis. 94:130. https://doi.org/10.1094/PDIS-94-1-0130B Link, ISI, Google ScholarDecraemer, W. 1980. Rev. Nematol. 3:81. Google ScholarRiga, E., et al. 2007. Am. J. Potato Res. 84:161. https://doi.org/10.1007/BF02987139 Crossref, ISI, Google ScholarYe, W., et al. 2015. Plant Dis. 99:291. https://doi.org/10.1094/PDIS-08-14-0830-PDN Link, ISI, Google ScholarDetailsFiguresLiterature CitedRelated Vol. 100, No. 6 June 2016SubscribeISSN:0191-2917e-ISSN:1943-7692 Metrics Article History Issue Date: 12 May 2016Published: 18 Mar 2016First Look: 19 Jan 2016Accepted: 12 Jan 2016 Pages: 1247-1247 Information© 2016 The American Phytopathological SocietyCited byTobacco rattle virus (spraing of potato)CABI Compendium, Vol. CABI CompendiumOccurrence of plant-parasitic nematodes in sugarbeet fields of North Dakota and MinnesotaCrop Protection, Vol. 142Occurrence of vermiform plant-parasitic nematodes in North Dakota corn fields and impact of environmental and soil factors23 October 2019 | Canadian Journal of Plant Pathology, Vol. 42, No. 3Assessment of Factors Associated with Molecular Quantification of Stubby Root Nematode Paratrichodorus allius from Field Soil DNADanqiong Huang, Guiping Yan, Neil C. Gudmestad, and Jonathan Whitworth8 October 2019 | Plant Disease, Vol. 103, No. 12Developing a One-Step Multiplex PCR Assay for Rapid Detection of Four Stubby-Root Nematode Species, Paratrichodorus allius, P. minor, P. porosus, and Trichodorus obtususDanqiong Huang, Guiping Yan, Neil Gudmestad, Weimin Ye, Jonathan Whitworth, Kenneth Frost, William Crow, and Abolfazl Hajihassani31 December 2018 | Plant Disease, Vol. 103, No. 3Molecular Characterization and Identification of Stubby Root Nematode Species From Multiple States in the United StatesDanqiong Huang, Guiping Yan, Neil Gudmestad, Jonathan Whitworth, Kenneth Frost, Charles Brown, Weimin Ye, Paula Agudelo, and William Crow31 August 2018 | Plant Disease, Vol. 102, No. 11Plant Parasitic Nematodes of North Dakota and South Dakota18 December 2018Developing a Real-Time PCR Assay for Direct Identification and Quantification of Pratylenchus penetrans in SoilRichard Baidoo, Guiping Yan, Seenivasan Nagachandrabose, and Andrea M. Skantar8 June 2017 | Plant Disease, Vol. 101, No. 8Use of Chemical Flocculation and Nested PCR for Heterodera glycines Detection in DNA Extracts from Field Soils with Low Population DensitiesRichard Baidoo, Guiping Yan, Berlin Nelson, Andrea M. Skantar, and Senyu Chen10 April 2017 | Plant Disease, Vol. 101, No. 7Development of Real-Time and Conventional PCR Assays for Identifying Stubby Root Nematode Paratrichodorus alliusDanqiong Huang, Guiping Yan, and Andrea M. Skantar20 March 2017 | Plant Disease, Vol. 101, No. 6Specific Detection of the Root-Lesion Nematode Pratylenchus scribneri Using Conventional and Real-Time PCRDanqiong Huang and Guiping Yan30 November 2016 | Plant Disease, Vol. 101, No. 2Quantification of Paratrichodorus allius in DNA extracted from soil using TaqMan Probe and SYBR Green real-time PCR assaysNematology, Vol. 19, No. 8" @default.
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