Matches in SemOpenAlex for { <https://semopenalex.org/work/W2315342613> ?p ?o ?g. }
- W2315342613 abstract "We study the conformational equilibrium between B-to-A forms of ds-DNA adsorbed onto a single-walled carbon nanotube (SWNT) using free energy profile calculations based on all-atom molecular dynamics simulations. The potential of mean force (PMF) of the B-to-A transition of ds-DNA in the presence of an uncharged (10,0) carbon nanotube for two dodecamers with poly-AT or poly-GC sequences is calculated as a function of a root-mean-square-distance (ΔRMSD) difference metric for the B-to-A transition. The calculations reveal that in the presence of a SWNT DNA favors B-form DNA significantly in both poly-GC and poly-AT sequences. Furthermore, the poly-AT DNA:SWNT complex shows a higher energy penalty for adopting an A-like conformation than poly-GC DNA:SWNT by several kcal/mol. The presence of a SWNT on either poly-AT or poly-GC DNA affects the PMF of the transition such that the B form is favored by as much as 10 kcal/mol. In agreement with published data, we find a potential energy minimum between A and B-form DNA at ΔRMSD ≈ -1.5 Å and that the presence of the SWNT moves this minimum by as much as ΔRMSD = 3 Å." @default.
- W2315342613 created "2016-06-24" @default.
- W2315342613 creator A5024893997 @default.
- W2315342613 creator A5085371660 @default.
- W2315342613 date "2014-11-04" @default.
- W2315342613 modified "2023-09-30" @default.
- W2315342613 title "Single-Walled Carbon Nanotubes Modulate the B- to A-DNA Transition" @default.
- W2315342613 cites W1970661980 @default.
- W2315342613 cites W1970973025 @default.
- W2315342613 cites W1979003335 @default.
- W2315342613 cites W1980516378 @default.
- W2315342613 cites W1989906072 @default.
- W2315342613 cites W1990384998 @default.
- W2315342613 cites W1992743916 @default.
- W2315342613 cites W1992813955 @default.
- W2315342613 cites W1993177346 @default.
- W2315342613 cites W1995282821 @default.
- W2315342613 cites W1997251501 @default.
- W2315342613 cites W2003868058 @default.
- W2315342613 cites W2012249071 @default.
- W2315342613 cites W2015248366 @default.
- W2315342613 cites W2017681551 @default.
- W2315342613 cites W2022696619 @default.
- W2315342613 cites W2027408247 @default.
- W2315342613 cites W2029667189 @default.
- W2315342613 cites W2031244056 @default.
- W2315342613 cites W2048252261 @default.
- W2315342613 cites W2051536237 @default.
- W2315342613 cites W2059443620 @default.
- W2315342613 cites W2061553428 @default.
- W2315342613 cites W2067174909 @default.
- W2315342613 cites W2068932598 @default.
- W2315342613 cites W2069202833 @default.
- W2315342613 cites W2079222587 @default.
- W2315342613 cites W2084482408 @default.
- W2315342613 cites W2090858729 @default.
- W2315342613 cites W2095008755 @default.
- W2315342613 cites W2106140689 @default.
- W2315342613 cites W2108144639 @default.
- W2315342613 cites W2110233014 @default.
- W2315342613 cites W2112154906 @default.
- W2315342613 cites W2119948135 @default.
- W2315342613 cites W2120153478 @default.
- W2315342613 cites W2160742532 @default.
- W2315342613 cites W2160773716 @default.
- W2315342613 cites W2162166182 @default.
- W2315342613 cites W2168442336 @default.
- W2315342613 cites W2322717217 @default.
- W2315342613 cites W4230103577 @default.
- W2315342613 cites W1979377436 @default.
- W2315342613 doi "https://doi.org/10.1021/jp5081274" @default.
- W2315342613 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/4275165" @default.
- W2315342613 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/25553205" @default.
- W2315342613 hasPublicationYear "2014" @default.
- W2315342613 type Work @default.
- W2315342613 sameAs 2315342613 @default.
- W2315342613 citedByCount "4" @default.
- W2315342613 countsByYear W23153426132016 @default.
- W2315342613 countsByYear W23153426132017 @default.
- W2315342613 countsByYear W23153426132023 @default.
- W2315342613 crossrefType "journal-article" @default.
- W2315342613 hasAuthorship W2315342613A5024893997 @default.
- W2315342613 hasAuthorship W2315342613A5085371660 @default.
- W2315342613 hasBestOaLocation W23153426131 @default.
- W2315342613 hasConcept C147597530 @default.
- W2315342613 hasConcept C171250308 @default.
- W2315342613 hasConcept C175634916 @default.
- W2315342613 hasConcept C185592680 @default.
- W2315342613 hasConcept C192562407 @default.
- W2315342613 hasConcept C513720949 @default.
- W2315342613 hasConcept C552990157 @default.
- W2315342613 hasConcept C55493867 @default.
- W2315342613 hasConcept C59593255 @default.
- W2315342613 hasConcept C8010536 @default.
- W2315342613 hasConceptScore W2315342613C147597530 @default.
- W2315342613 hasConceptScore W2315342613C171250308 @default.
- W2315342613 hasConceptScore W2315342613C175634916 @default.
- W2315342613 hasConceptScore W2315342613C185592680 @default.
- W2315342613 hasConceptScore W2315342613C192562407 @default.
- W2315342613 hasConceptScore W2315342613C513720949 @default.
- W2315342613 hasConceptScore W2315342613C552990157 @default.
- W2315342613 hasConceptScore W2315342613C55493867 @default.
- W2315342613 hasConceptScore W2315342613C59593255 @default.
- W2315342613 hasConceptScore W2315342613C8010536 @default.
- W2315342613 hasFunder F4320337354 @default.
- W2315342613 hasLocation W23153426131 @default.
- W2315342613 hasLocation W23153426132 @default.
- W2315342613 hasLocation W23153426133 @default.
- W2315342613 hasLocation W23153426134 @default.
- W2315342613 hasOpenAccess W2315342613 @default.
- W2315342613 hasPrimaryLocation W23153426131 @default.
- W2315342613 hasRelatedWork W1970467645 @default.
- W2315342613 hasRelatedWork W1975885491 @default.
- W2315342613 hasRelatedWork W2052433069 @default.
- W2315342613 hasRelatedWork W2171277967 @default.
- W2315342613 hasRelatedWork W2313521296 @default.
- W2315342613 hasRelatedWork W2392163657 @default.
- W2315342613 hasRelatedWork W2616971963 @default.
- W2315342613 hasRelatedWork W2748952813 @default.
- W2315342613 hasRelatedWork W2899084033 @default.