FRINK Linked Data Fragments server

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• W2317958576 abstract "Event Abstract Back to Event Orchestration of web services in the NIF project: using the Kepler workflow engine for data fusion Vadim Astakhov1*, Anita Bandrowski1, Amarnath Gupta1, Jeffery Grethe1 and Maryann Martone1 1 UCSD, United States We report on progress of employing the Kepler workflow engine and service oriented architecture (SOA) to prototype application integration workflows that integrate data and web services developed by the Neuroscience Information Framework (NIF). One prerequisite of the scientific enterprise consists of searching for effective and useful data and resources, i.e., reagents, neuro-anatomy features, genes, or proteins. Finding relevant resources is becoming not a challenge of scarcity, but one of overabundance; in fact relevant data can be found anywhere among thousands of neuroscience-relevant information resources created by a range of information providers including, research groups, funding agencies, vendor groups, and public data initiatives. NIF provides a graphical user interface, GUI, to locate and access ontologically aligned and semantically fused heterogeneous federated information. NIF also atomized the various functions that serve the user interface and put them out as services that can be used like Lego blocks to query the data, build entirely new interfaces or tools. Currently, we use Kepler to orchestrate communication among various NIF services and provide a transparent layer for data fusion. Kepler combines data and processes into a configurable, structured set of steps that helps to implement semi-automated workflows. Kepler provides a development environment with a graphical user interface for designing workflows composed of a linked set of components called Actors, which can be executed under different Models of Computation. In this work, we report on specific workflows that perform data fusion and orchestration of diverse web services. This Brain data flow(See figures below) outputs categorized counts of information from 150 data sources about brain regions. Obtaining a similar set of data from the NIF GUI, requires manually writing down result counts that are the result values for each database for each query. Kepler, unencumbered by the current configuration of the user interface can be asked to pull a different set of data from the result set, in this case the number of results, and place that into a table. This table can then be easily turned into a graphic that helps users see which databases are information rich given a particular query. In this example, Kepler loops and recovers the same set of information for all of the brain parts and all databases, producing a massive matrix ( http://tinyurl.com/6nkfe9f ). Figure 1 Keywords: General neuroinformatics, DATA FUSION, web services, ontology, computational model Conference: 5th INCF Congress of Neuroinformatics, Munich, Germany, 10 Sep - 12 Sep, 2012. Presentation Type: Poster Topic: Neuroinformatics Citation: Astakhov V, Bandrowski A, Gupta A, Grethe J and Martone M (2014). Orchestration of web services in the NIF project: using the Kepler workflow engine for data fusion. Front. Neuroinform. Conference Abstract: 5th INCF Congress of Neuroinformatics. doi: 10.3389/conf.fninf.2014.08.00019 Copyright: The abstracts in this collection have not been subject to any Frontiers peer review or checks, and are not endorsed by Frontiers. They are made available through the Frontiers publishing platform as a service to conference organizers and presenters. The copyright in the individual abstracts is owned by the author of each abstract or his/her employer unless otherwise stated. Each abstract, as well as the collection of abstracts, are published under a Creative Commons CC-BY 4.0 (attribution) licence (https://creativecommons.org/licenses/by/4.0/) and may thus be reproduced, translated, adapted and be the subject of derivative works provided the authors and Frontiers are attributed. For Frontiers’ terms and conditions please see https://www.frontiersin.org/legal/terms-and-conditions. Received: 21 Mar 2013; Published Online: 27 Feb 2014. * Correspondence: Dr. Vadim Astakhov, UCSD, San Diego, United States, astakhov@ncmir.ucsd.edu Login Required This action requires you to be registered with Frontiers and logged in. To register or login click here. Abstract Info Abstract The Authors in Frontiers Vadim Astakhov Anita Bandrowski Amarnath Gupta Jeffery Grethe Maryann Martone Google Vadim Astakhov Anita Bandrowski Amarnath Gupta Jeffery Grethe Maryann Martone Google Scholar Vadim Astakhov Anita Bandrowski Amarnath Gupta Jeffery Grethe Maryann Martone PubMed Vadim Astakhov Anita Bandrowski Amarnath Gupta Jeffery Grethe Maryann Martone Related Article in Frontiers Google Scholar PubMed Abstract Close Back to top Javascript is disabled. Please enable Javascript in your browser settings in order to see all the content on this page." @default.
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• W2317958576 title "Orchestration of web services in the NIF project: using the Kepler workflow engine for data fusion" @default.
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