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- W2324391007 abstract "We demonstrate the stepwise assembly of a fully addressable polycyclic DNA hexagon nanonetwork for the preparation of a four-ring system, one of the biggest networks yet constructed from tripodal building blocks. We find that the yield exhibits a distinct upper level <100%, a fundamental problem of thermodynamic DNA assembly that appears to have been overlooked in the DNA nanotechnology literature. A simplistic model based on a single step-yield parameterycanquantitativelydescribethetotalyieldofDNAassembliesinone-potreactionsasY= yduplex n , with n the number of hybridization steps. Experimental errors introducing deviations from perfect stoichiometry and the thermodynamics of hybridization equilibria contribute to decreasing thevalueofyduplex(onaveragey= 0.96forour10base pairhybridization). Forthefour-ring system (n=31),thetotalyieldisthuslessthan30%,whichisclearlyunsatisfactoryifbiggernanoconstructs ofthisclassaretobedesigned.Therefore,weintroducedsite-specificclickchemistryformakingand purifying robust building blocks for future modular constructs of larger assemblies. Although the present yield of this robust module was only about 10%, it demonstrates a first step toward a general fabrication approach. Interestingly, we find that the click yields follow quantitatively a binomial distribution, the predictability of which indicates the usefulness of preparing pools of pure and robust building blocks in this way. The binomial behavior indicates that there is no interference between the six simultaneous click reactions but that step-yield limiting factors such as topological constraints and Cu(I) catalyst concentration are local and independent." @default.
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- W2324391007 date "2011-01-01" @default.
- W2324391007 modified "2023-09-27" @default.
- W2324391007 title "Nanofabrication Yields. Hybridization and Click-Fixation of Polycyclic DNA" @default.
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