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• W2337340335 abstract "Analysis of the composition of heterogeneous tissue has been greatly enabled by recent developments in single-cell transcriptomics. We present SCell, an integrated software tool for quality filtering, normalization, feature selection, iterative dimensionality reduction, clustering and the estimation of gene-expression gradients from large ensembles of single-cell RNA-seq datasets. SCell is open source, and implemented with an intuitive graphical interface. Scripts and protocols for the high-throughput pre-processing of large ensembles of single-cell, RNA-seq datasets are provided as an additional resource.Binary executables for Windows, MacOS and Linux are available at http://sourceforge.net/projects/scell, source code and pre-processing scripts are available from https://github.com/diazlab/SCellSupplementary information: Supplementary data are available at Bioinformatics online.aaron.diaz@ucsf.edu." @default.
• W2337340335 created "2016-06-24" @default.
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• W2337340335 date "2016-04-19" @default.
• W2337340335 modified "2023-09-27" @default.
• W2337340335 title "SCell: integrated analysis of single-cell RNA-seq data" @default.
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• W2337340335 doi "https://doi.org/10.1093/bioinformatics/btw201" @default.
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