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- W2356379020 abstract "【Objective】According to the whole-genome sequencing results of soft rot bacteria XJ8-3-3 inbanana,Prediction and analysis of signal peptide for this bacteria can help us to research secreted pro-teins,which benefits confirming the molecular mechanisms of the interaction between banana and patho-genic microorganisms.【Method】Using several software of Signal Pv4.1,TMHMMv2.0,THUMBUP,Tar-get P1.1,Lipo P1.0,Tat P1.0 and big-PI predictor,4 313 ORFs of the genome of banana soft rot bacteriawere predicted and analyzed. In addition,the function of ORFs where were the signal peptides was pre-dicted by Swissprot database.【Result】We found that there were 218 ORFs containing signal peptide ac-counting for 5.05% of the ORFs coded by genome,in which there were 184 ORFs belonging to typeⅠ,32 ORFs belonging to type Ⅱ,2 ORFs belonging to type CYT,but Prepilin-like type was not discov-ered. Signal peptides had 22.56 amino acids evenly,and most of all were nonpolar. In all secreted pro-teins,122 had divinable function,and others were function-unknown putative protein.【Conclusion】Theanalysis of the signal peptide and secreted proteins in banana soft rot bacteria XJ8-3-3 genome ORF re-vealed a lot of pathogenic factors such as pectinase,protease,cellase and some assumed pathogenic fac-tors wich could act as candidate genes for the further studies of the interaction between banana and patho-genic bacteria: Banana soft rot bacteriaSignal peptideSecreted protein" @default.
- W2356379020 created "2016-06-24" @default.
- W2356379020 creator A5033508089 @default.
- W2356379020 date "2014-01-01" @default.
- W2356379020 modified "2023-09-24" @default.
- W2356379020 title "Prediction and analysis of the signal peptide and secreted proteins in soft rot bacteria XJ8-3-3 genome ORFs of banana" @default.
- W2356379020 hasPublicationYear "2014" @default.
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