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• W2412700651 abstract "Staphylococcus epidermidis is a major human associated bacterium and also an emerging nosocomial pathogen. There are reports of its association to rodents, sheep and plants. However, comparative and evolutionary studies of ecologically diverse strains of S. epidermidis are lacking. Here, we report the whole genome sequences of four S. epidermidis strains isolated from surface sterilized rice seeds along with genome sequence of type strain. Phylogenomic analysis of rice endophytic S. epidermidis (RESE) with type strain unequivocally established their species identity. Whole genome based tree of 93 strains of S. epidermidis revealed RESE as distinct sub-lineage which is more related to rodent sub-lineage than to majority of human lineage strains. Furthermore, comparative genomics revealed 20% variable gene-pool in S. epidermidis, suggesting that genomes of ecologically diverse strains are under flux. Interestingly, we were also able to map several genomic regions that are under flux and gave rise to RESE strains. The largest of these genomic regions encodes a cluster of genes unique to RESE that are known to be required for survival and stress tolerance, apart from those required for adaptation to plant habitat. The genomes and genes of RESE represent distinct ecological resource/sequences and provided first evolutionary insights into adaptation of S. epidermidis to plants." @default.
• W2412700651 created "2016-06-24" @default.
• W2412700651 creator A5049221000 @default.
• W2412700651 creator A5085164451 @default.
• W2412700651 date "2016-01-13" @default.
• W2412700651 modified "2023-09-27" @default.
• W2412700651 title "Genomic investigation reveals evolution and lifestyle adaptation of endophytic Staphylococcus epidermidis" @default.
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• W2412700651 doi "https://doi.org/10.1038/srep19263" @default.
• W2412700651 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/4713051" @default.
• W2412700651 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/26758912" @default.
• W2412700651 hasPublicationYear "2016" @default.
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