FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W2467114126> ?p ?o ?g. }

• W2467114126 abstract "In benthic deep-sea ecosystems, which represent the largest biome on Earth, viruses have a recognised key ecological role, but their diversity is still largely unknown. Identifying the taxonomic composition of viruses is crucial for understanding virus-host interactions, their role in food web functioning and evolutionary processes. Here, we compared the performance of various bioinformatic tools (BLAST, MG-RAST, NBC, VMGAP, MetaVir, VIROME) for analysing the viral taxonomic composition in simulated viromes and viral metagenomes from different benthic deep-sea ecosystems. The analyses of simulated viromes indicate that all the BLAST tools, followed by MetaVir and VMGAP, are more reliable in the affiliation of viral sequences and strains. When analysing the environmental viromes, tBLASTx, MetaVir, VMGAP and VIROME showed a similar efficiency of sequence annotation; however, MetaVir and tBLASTx identified a higher number of viral strains. These latter tools also identified a wider range of viral families than the others, providing a wider view of viral taxonomic diversity in benthic deep-sea ecosystems. Our findings highlight strengths and weaknesses of available bioinformatic tools for investigating the taxonomic diversity of viruses in benthic ecosystems in order to improve our comprehension of viral diversity in the oceans and its relationships with host diversity and ecosystem functioning." @default.
• W2467114126 created "2016-07-22" @default.
• W2467114126 creator A5002440508 @default.
• W2467114126 creator A5014800506 @default.
• W2467114126 creator A5029882231 @default.
• W2467114126 creator A5039910944 @default.
• W2467114126 creator A5053500391 @default.
• W2467114126 date "2016-06-22" @default.
• W2467114126 modified "2023-10-16" @default.
• W2467114126 title "Assessing viral taxonomic composition in benthic marine ecosystems: reliability and efficiency of different bioinformatic tools for viral metagenomic analyses" @default.
• W2467114126 cites W1523894467 @default.
• W2467114126 cites W1552724685 @default.
• W2467114126 cites W1968077605 @default.
• W2467114126 cites W1971908207 @default.
• W2467114126 cites W1974846245 @default.
• W2467114126 cites W1982265452 @default.
• W2467114126 cites W1989348205 @default.
• W2467114126 cites W1995614275 @default.
• W2467114126 cites W1998180902 @default.
• W2467114126 cites W1998324647 @default.
• W2467114126 cites W2020637322 @default.
• W2467114126 cites W2023652460 @default.
• W2467114126 cites W2029551594 @default.
• W2467114126 cites W2037024917 @default.
• W2467114126 cites W2042040959 @default.
• W2467114126 cites W2047726284 @default.
• W2467114126 cites W2055043387 @default.
• W2467114126 cites W2062608585 @default.
• W2467114126 cites W2071892183 @default.
• W2467114126 cites W2074955520 @default.
• W2467114126 cites W2076184415 @default.
• W2467114126 cites W2079706758 @default.
• W2467114126 cites W2082860967 @default.
• W2467114126 cites W2091437285 @default.
• W2467114126 cites W2100896078 @default.
• W2467114126 cites W2101831420 @default.
• W2467114126 cites W2113878642 @default.
• W2467114126 cites W2118341464 @default.
• W2467114126 cites W2120655738 @default.
• W2467114126 cites W2121180999 @default.
• W2467114126 cites W2121472218 @default.
• W2467114126 cites W2122337693 @default.
• W2467114126 cites W2123009189 @default.
• W2467114126 cites W2124667865 @default.
• W2467114126 cites W2127730569 @default.
• W2467114126 cites W2128124531 @default.
• W2467114126 cites W2130747214 @default.
• W2467114126 cites W2142575004 @default.
• W2467114126 cites W2144463786 @default.
• W2467114126 cites W2148181108 @default.
• W2467114126 cites W2162704968 @default.
• W2467114126 cites W2173503307 @default.
• W2467114126 cites W2325529133 @default.
• W2467114126 cites W4239871258 @default.
• W2467114126 doi "https://doi.org/10.1038/srep28428" @default.
• W2467114126 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/4916513" @default.
• W2467114126 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/27329207" @default.
• W2467114126 hasPublicationYear "2016" @default.
• W2467114126 type Work @default.
• W2467114126 sameAs 2467114126 @default.
• W2467114126 citedByCount "26" @default.
• W2467114126 countsByYear W24671141262017 @default.
• W2467114126 countsByYear W24671141262018 @default.
• W2467114126 countsByYear W24671141262019 @default.
• W2467114126 countsByYear W24671141262020 @default.
• W2467114126 countsByYear W24671141262021 @default.
• W2467114126 countsByYear W24671141262022 @default.
• W2467114126 crossrefType "journal-article" @default.
• W2467114126 hasAuthorship W2467114126A5002440508 @default.
• W2467114126 hasAuthorship W2467114126A5014800506 @default.
• W2467114126 hasAuthorship W2467114126A5029882231 @default.
• W2467114126 hasAuthorship W2467114126A5039910944 @default.
• W2467114126 hasAuthorship W2467114126A5053500391 @default.
• W2467114126 hasBestOaLocation W24671141261 @default.
• W2467114126 hasConcept C104317684 @default.
• W2467114126 hasConcept C110872660 @default.
• W2467114126 hasConcept C126831891 @default.
• W2467114126 hasConcept C141231307 @default.
• W2467114126 hasConcept C15151743 @default.
• W2467114126 hasConcept C18903297 @default.
• W2467114126 hasConcept C189592816 @default.
• W2467114126 hasConcept C190743605 @default.
• W2467114126 hasConcept C20850961 @default.
• W2467114126 hasConcept C54355233 @default.
• W2467114126 hasConcept C71640776 @default.
• W2467114126 hasConcept C78458016 @default.
• W2467114126 hasConcept C83042747 @default.
• W2467114126 hasConcept C86803240 @default.
• W2467114126 hasConcept C8769409 @default.
• W2467114126 hasConcept C89920630 @default.
• W2467114126 hasConceptScore W2467114126C104317684 @default.
• W2467114126 hasConceptScore W2467114126C110872660 @default.
• W2467114126 hasConceptScore W2467114126C126831891 @default.
• W2467114126 hasConceptScore W2467114126C141231307 @default.
• W2467114126 hasConceptScore W2467114126C15151743 @default.
• W2467114126 hasConceptScore W2467114126C18903297 @default.
• W2467114126 hasConceptScore W2467114126C189592816 @default.
• W2467114126 hasConceptScore W2467114126C190743605 @default.
• W2467114126 hasConceptScore W2467114126C20850961 @default.
• W2467114126 hasConceptScore W2467114126C54355233 @default.

• next