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- W2516685889 abstract "BAC end sequences (BES) are a valuable resource in the genome research of any organism. Sequencing of BAC ends generates gene markers for comparative genome analysis, reveals microsattelites useful for map integration, allows an assessment of genomic architecture, and provides a framework for efficient genome sequencing. To develop such a resource in the aquaculture species channel catfish (Ictalurus punctatus Rafinesque), 25,195 BAC ends were sequenced generating 20,366 clean BES with an average read length of 557 bp after trimming. A total of 11,414,601 bp were obtained representing approximately 1.2% of the catfish genome. Based on this survey, the catfish genome was found to be highly AT-rich with 60.7% AT and 39.3% GC. Approximately 12% of the catfish genome consisted of dispersed repetitive elements with the Tc1/mariner transposons making up the largest percentage by base pair (4.57%). Microsatellites were detected in 17.5% of BES, providing valuable resources for map integration. Catfish BACs were anchored to the zebrafish and Tetraodon genome sequences by BLASTN search, revealing 16% and 8.2% significant hits (E < e), respectively. A total of 1,074 and 773 significant hits were unique to the zebrafish and Tetraodon genomes, respectively, of which 417 and 406 were identified as known genes." @default.
- W2516685889 created "2016-09-16" @default.
- W2516685889 creator A5073579725 @default.
- W2516685889 date "2007-08-15" @default.
- W2516685889 modified "2023-09-23" @default.
- W2516685889 title "Physical map construction and physical characterization of channel catfish genome" @default.
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- W2516685889 hasPublicationYear "2007" @default.
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