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• W2560482685 abstract "Phenotyping local crop cultivars is becoming more and more important, as they are an important genetic source for breeding - especially in regard to inherent root system architectures. Machine learning algorithms are promising tools to assist in the analysis of complex data sets; novel approaches are need to apply them on root phenotyping data of mature plants. A greenhouse experiment was conducted in large, sand-filled columns to differentiate 16 European Pisum sativum cultivars based on 36 manually derived root traits. Through combining random forest and support vector machine models, machine learning algorithms were successfully used for unbiased identification of most distinguishing root traits and subsequent pairwise cultivar differentiation. Up to 86% of pea cultivar pairs could be distinguished based on top five important root traits (Timp5) - Timp5 differed widely between cultivar pairs. Selecting top important root traits (Timp) provided a significant improved classification compared to using all available traits or randomly selected trait sets. The most frequent Timp of mature pea cultivars was total surface area of lateral roots originating from tap root segments at 0-5 cm depth. The high classification rate implies that culturing did not lead to a major loss of variability in root system architecture in the studied pea cultivars. Our results illustrate the potential of machine learning approaches for unbiased (root) trait selection and cultivar classification based on rather small, complex phenotypic data sets derived from pot experiments. Powerful statistical approaches are essential to make use of the increasing amount of (root) phenotyping information, integrating the complex trait sets describing crop cultivars." @default.
• W2560482685 created "2016-12-16" @default.
• W2560482685 creator A5006016100 @default.
• W2560482685 creator A5046428562 @default.
• W2560482685 creator A5051932079 @default.
• W2560482685 date "2016-12-06" @default.
• W2560482685 modified "2023-10-17" @default.
• W2560482685 title "Phenotyping: Using Machine Learning for Improved Pairwise Genotype Classification Based on Root Traits" @default.
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• W2560482685 doi "https://doi.org/10.3389/fpls.2016.01864" @default.
• W2560482685 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/5138212" @default.
• W2560482685 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/27999587" @default.
• W2560482685 hasPublicationYear "2016" @default.
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