Matches in SemOpenAlex for { <https://semopenalex.org/work/W2564735272> ?p ?o ?g. }
Showing items 1 to 89 of
89
with 100 items per page.
- W2564735272 abstract "CaVEMan is an expectation maximization-based somatic substitution-detection algorithm that is written in C. The algorithm analyzes sequence data from a test sample, such as a tumor relative to a reference normal sample from the same patient and the reference genome. It performs a comparative analysis of the tumor and normal sample to derive a probabilistic estimate for putative somatic substitutions. When combined with a set of validated post-hoc filters, CaVEMan generates a set of somatic substitution calls with high recall and positive predictive value. Here we provide instructions for using a wrapper script called cgpCaVEManWrapper, which runs the CaVEMan algorithm and additional downstream post-hoc filters. We describe both a simple one-shot run of cgpCaVEManWrapper and a more in-depth implementation suited to large-scale compute farms. © 2016 by John Wiley & Sons, Inc." @default.
- W2564735272 created "2017-01-06" @default.
- W2564735272 creator A5007140000 @default.
- W2564735272 creator A5011152441 @default.
- W2564735272 creator A5021185845 @default.
- W2564735272 creator A5026738636 @default.
- W2564735272 creator A5045328655 @default.
- W2564735272 creator A5046527121 @default.
- W2564735272 creator A5072873709 @default.
- W2564735272 creator A5075956178 @default.
- W2564735272 date "2016-12-01" @default.
- W2564735272 modified "2023-10-18" @default.
- W2564735272 title "cgpCaVEManWrapper: Simple Execution of CaVEMan in Order to Detect Somatic Single Nucleotide Variants in NGS Data" @default.
- W2564735272 cites W2103441770 @default.
- W2564735272 cites W2108234281 @default.
- W2564735272 cites W2142386149 @default.
- W2564735272 cites W2149992227 @default.
- W2564735272 cites W2150677022 @default.
- W2564735272 cites W2154986869 @default.
- W2564735272 cites W2159084616 @default.
- W2564735272 cites W2192272998 @default.
- W2564735272 cites W2217642920 @default.
- W2564735272 cites W2254597562 @default.
- W2564735272 cites W2582574843 @default.
- W2564735272 doi "https://doi.org/10.1002/cpbi.20" @default.
- W2564735272 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/6097605" @default.
- W2564735272 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/27930805" @default.
- W2564735272 hasPublicationYear "2016" @default.
- W2564735272 type Work @default.
- W2564735272 sameAs 2564735272 @default.
- W2564735272 citedByCount "146" @default.
- W2564735272 countsByYear W25647352722017 @default.
- W2564735272 countsByYear W25647352722018 @default.
- W2564735272 countsByYear W25647352722019 @default.
- W2564735272 countsByYear W25647352722020 @default.
- W2564735272 countsByYear W25647352722021 @default.
- W2564735272 countsByYear W25647352722022 @default.
- W2564735272 countsByYear W25647352722023 @default.
- W2564735272 crossrefType "journal-article" @default.
- W2564735272 hasAuthorship W2564735272A5007140000 @default.
- W2564735272 hasAuthorship W2564735272A5011152441 @default.
- W2564735272 hasAuthorship W2564735272A5021185845 @default.
- W2564735272 hasAuthorship W2564735272A5026738636 @default.
- W2564735272 hasAuthorship W2564735272A5045328655 @default.
- W2564735272 hasAuthorship W2564735272A5046527121 @default.
- W2564735272 hasAuthorship W2564735272A5072873709 @default.
- W2564735272 hasAuthorship W2564735272A5075956178 @default.
- W2564735272 hasBestOaLocation W25647352722 @default.
- W2564735272 hasConcept C104317684 @default.
- W2564735272 hasConcept C111472728 @default.
- W2564735272 hasConcept C134305767 @default.
- W2564735272 hasConcept C138885662 @default.
- W2564735272 hasConcept C2780586882 @default.
- W2564735272 hasConcept C41008148 @default.
- W2564735272 hasConcept C512185932 @default.
- W2564735272 hasConcept C54355233 @default.
- W2564735272 hasConcept C70721500 @default.
- W2564735272 hasConcept C86803240 @default.
- W2564735272 hasConceptScore W2564735272C104317684 @default.
- W2564735272 hasConceptScore W2564735272C111472728 @default.
- W2564735272 hasConceptScore W2564735272C134305767 @default.
- W2564735272 hasConceptScore W2564735272C138885662 @default.
- W2564735272 hasConceptScore W2564735272C2780586882 @default.
- W2564735272 hasConceptScore W2564735272C41008148 @default.
- W2564735272 hasConceptScore W2564735272C512185932 @default.
- W2564735272 hasConceptScore W2564735272C54355233 @default.
- W2564735272 hasConceptScore W2564735272C70721500 @default.
- W2564735272 hasConceptScore W2564735272C86803240 @default.
- W2564735272 hasIssue "1" @default.
- W2564735272 hasLocation W25647352721 @default.
- W2564735272 hasLocation W25647352722 @default.
- W2564735272 hasLocation W25647352723 @default.
- W2564735272 hasOpenAccess W2564735272 @default.
- W2564735272 hasPrimaryLocation W25647352721 @default.
- W2564735272 hasRelatedWork W2002128513 @default.
- W2564735272 hasRelatedWork W2014709273 @default.
- W2564735272 hasRelatedWork W2034031100 @default.
- W2564735272 hasRelatedWork W2066749872 @default.
- W2564735272 hasRelatedWork W2395662243 @default.
- W2564735272 hasRelatedWork W2504925323 @default.
- W2564735272 hasRelatedWork W2526585662 @default.
- W2564735272 hasRelatedWork W2776736165 @default.
- W2564735272 hasRelatedWork W4255349516 @default.
- W2564735272 hasRelatedWork W2092874662 @default.
- W2564735272 hasVolume "56" @default.
- W2564735272 isParatext "false" @default.
- W2564735272 isRetracted "false" @default.
- W2564735272 magId "2564735272" @default.
- W2564735272 workType "article" @default.