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• W2602756132 abstract "HomePlant DiseaseVol. 101, No. 7First Report of Grapevine geminivirus A from Grapevines in China PreviousNext DISEASE NOTES OPENOpen Access licenseFirst Report of Grapevine geminivirus A from Grapevines in ChinaX. D. Fan, Z. P. Zhang, F. Ren, G. J. Hu, Z. N. Li, and Y. F. DongX. D. FanSearch for more papers by this author, Z. P. ZhangSearch for more papers by this author, F. RenSearch for more papers by this author, G. J. HuSearch for more papers by this author, Z. N. LiSearch for more papers by this author, and Y. F. DongSearch for more papers by this authorAffiliationsAuthors and Affiliations X. D. Fan Z. P. Zhang F. Ren G. J. Hu Z. N. Li Y. F. Dong , National Center for Eliminating Viruses from Deciduous Fruit Tree, Research Institute of Pomology, Chinese Academy of Agriculture Sciences, Xingcheng, China. Published Online:9 May 2017https://doi.org/10.1094/PDIS-01-17-0106-PDNAboutSections ToolsAdd to favoritesDownload CitationsTrack Citations ShareShare onFacebookTwitterLinked InRedditEmailWechat The viruses belonging to the family Geminiviridae have circular, single-stranded DNA genomes, and some geminiviruses can cause great damage to agriculture. Recently, a new geminivirus, tentatively named Grapevine geminivirus A (GGVA), was reported in grapevines (Al Rwahnih et al. 2017). In the present study, bark scrapings from an ‘Ayaneskeal’ grapevine with foliar ringspots were used for the extraction of small RNAs and sequencing in 2012. The analysis generated approximately 29,319,407 Illumina reads of 16 to 28 nt in length and more than 463,611 reads were mapped to the GGVA genome. BLAST analysis showed also the presence of Grapevine leafroll-associated virus-3, Grapevine berry inner necrosis virus, Grapevine yellow speckle viroid 1, Grapevine yellow speckle viroid 2, and Hop stunt viroid. The full GGVA genome was amplified using two overlapping primers designed based on the sequences of the assembled contig [(23-1F/2R (5′-TGTCGGCCATGTCAGGGTGTT-3′) and (5′-GGCATAGATGATACAATTGCA-3′)]. Sequencing showed that the GGVA genome of isolate LN_ANSJ (GenBank accession no. KX950822) was 2,905 nt in length, and was 98% identical with the previously reported GGVA isolate NP (KX570610). The genome of LN_ANSJ had the same six open reading frames (ORFs) as the NP isolate, and the same nonanucleotide stem-loop sequence “TAATATT↓AC” in the intergenic region. Furthermore, two primers, C1-1F/1R (5′-CAGTATCTTCTGAGGCACGA-3′/5′-GCTAACGACGCTTATGCTGA-3′) and V1-1F/1R (5′-AAGAGGAAATCTTTCGCACC-3′/5′-AATTGACTCGATTACGACCAG-3′), were designed based on the sequences of C1 and V1 genes to amplify a 703-bp and 568-bp fragment in the Rep and CP genes of GGVA, respectively. In a survey of 69 grapevines of 20 different grapevine cultivars collected from four different provinces (Liaoning, Shandong, Ningxia, and Sichuan) in China, PCR testing using the primers C1-1F/1R and V1-1F/1R showed that 55% (38/69) of the samples tested positive for GGVA, and the incidence was high in the common cultivars and rootstocks such as Summer Black (100%, 6/6), Ruby Seedless (100%, 6/6), Cabernet Franc (71.4%, 5/7), and Beta grapevines (42.9%, 6/14). GGVA was not found in the native Amur grapevine ‘Beibinghong’ (0/8). Some PCR products were cloned and sequenced and sequencing confirmed them to be virus-specific. In the tested grapevines, most samples did not exhibit any symptoms, except for three grapevines which had foliar ringspots. The results suggested that GGVA may be widely distributed in China and may not cause obvious symptoms in many grapevine cultivars. To the best of our knowledge, this is the first report of GGVA in China.Reference:Al Rwahnih, M., et al. 2017. Phytopathology 107:240. https://doi.org/10.1094/PHYTO-07-16-0282-R Link, ISI, Google ScholarThis work was supported by the China Agricultural Research System (no. CARS-30-bc-3).DetailsFiguresLiterature CitedRelated Vol. 101, No. 7 July 2017SubscribeISSN:0191-2917e-ISSN:1943-7692 Metrics Article History Issue Date: 20 Jun 2017Published: 9 May 2017First Look: 27 Mar 2017Accepted: 17 Mar 2017 Pages: 1333-1333 Information© 2017 The American Phytopathological SocietyCited byDevelopment and application of crude sap-based recombinase polymerase amplification assay for the detection and occurrence of grapevine geminivirus A in Indian grapevine cultivars9 March 2023 | Frontiers in Plant Science, Vol. 14A thermal cycler-based, homogenization-free plant total nucleic acid extraction method for plant viruses and viroids assayJournal of Virological Methods, Vol. 313Grapevine berry inner necrosis virusCABI Compendium, Vol. CABI CompendiumGrapevine geminivirus ACABI Compendium, Vol. CABI CompendiumGrapevine yellow speckle viroid 2CABI Compendium, Vol. CABI CompendiumDevelopment of a Full-Length Infectious cDNA Clone of the Grapevine Berry Inner Necrosis Virus11 October 2020 | Plants, Vol. 9, No. 10Molecular Characterization and Genomic Function of Grapevine Geminivirus A2 September 2020 | Frontiers in Microbiology, Vol. 11First Report of Grapevine Geminivirus A in Vitis in New ZealandS. Veerakone, A. G. Blouin, R. A. Barrero, K. R. Napier, R. M. MacDiarmid, and L. I. Ward19 November 2019 | Plant Disease, Vol. 104, No. 2Pest categorisation of non‐EU viruses and viroids of Vitis L.EFSA Journal, Vol. 17, No. 9First Report of Grapevine geminivirus A in Diverse Vitis Species in KoreaY. Jo, H. Choi, M. K. Song, J. S. Park, J. W. Lee, and W. K. Cho26 October 2017 | Plant Disease, Vol. 102, No. 1" @default.
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