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• W2610064359 abstract "Long non-coding RNAs (lncRNAs) function in various biological processes. However, their roles in secondary growth of plants remain poorly understood. Here, 15,691 lncRNAs were identified from vascular cambium, developing xylem, and mature xylem of Populus tomentosa with high and low biomass using RNA-seq, including 1,994 lncRNAs that were differentially expressed (DE) among the six libraries. 3,569 cis-regulated and 3,297 trans-regulated protein-coding genes were predicted as potential target genes (PTGs) of the DE lncRNAs to participate in biological regulation. Then, 476 and 28 lncRNAs were identified as putative targets and endogenous target mimics (eTMs) of Populus known microRNAs (miRNAs), respectively. Genome re-sequencing of 435 individuals from a natural population of P. tomentosa found 34,015 single nucleotide polymorphisms (SNPs) within 178 lncRNA loci and 522 PTGs. Single-SNP associations analysis detected 2,993 associations with 10 growth and wood-property traits under additive and dominance model. Epistasis analysis identified 17,656 epistatic SNP pairs, providing evidence for potential regulatory interactions between lncRNAs and their PTGs. Furthermore, a reconstructed epistatic network, representing interactions of 8 lncRNAs and 15 PTGs, might enrich regulation roles of genes in the phenylpropanoid pathway. These findings may enhance our understanding of non-coding genes in plants." @default.
• W2610064359 created "2017-05-05" @default.
• W2610064359 creator A5001715548 @default.
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• W2610064359 creator A5023340933 @default.
• W2610064359 creator A5037162014 @default.
• W2610064359 creator A5082134918 @default.
• W2610064359 date "2017-04-26" @default.
• W2610064359 modified "2023-10-14" @default.
• W2610064359 title "Identification and allelic dissection uncover roles of lncRNAs in secondary growth of Populus tomentosa" @default.
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• W2610064359 doi "https://doi.org/10.1093/dnares/dsx018" @default.
• W2610064359 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/5737087" @default.
• W2610064359 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/28453813" @default.
• W2610064359 hasPublicationYear "2017" @default.
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• W2610064359 hasAuthorship W2610064359A5037162014 @default.

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