FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W2620606831> ?p ?o ?g. }

• W2620606831 abstract "Waterlogging has increasingly become one of the major constraints to maize productivity in some maize production zones because it causes serious yield loss. Bulked segregant RNA-seq (BSR-seq) has been widely applied to profile candidate genes and map associated Single Nucleotide Polymorphism (SNP) markers in many species. In this study, ten waterlogging sensitive and eight tolerant inbred lines were selected from 60 maize inbred lines with waterlogging response determined and preselected by the International Maize and Wheat Improvement Center (CIMMYT) from over 400 tropical maize inbred lines. BSR-seq was performed to identify differentially expressed genes (DEGs) and SNPs associated with waterlogging tolerance. Upon waterlogging stress, 354 and 1094 genes were differentially expressed in the tolerant and sensitive pools, respectively, compared to untreated controls. When tolerant and sensitive pools were compared, 593 genes were differentially expressed under untreated and 431 genes under waterlogged conditions, of which 122 genes overlapped. To validate the BSR-seq results, the expression levels of six genes were determined by qRT-PCR. The qRT-PCR results were consistent with BSR-seq results. Comparison of allelic polymorphism in mRNA sequences between tolerant and sensitive pools revealed 165 (normal condition) and 128 (waterlogged condition) high-probability SNPs. We found 18 overlapping SNPs with genomic positions mapped. Eighteen SNPs were contained in 18 genes, and eight and nine of 18 genes were responsive to waterlogging stress in tolerant and sensitive lines, respectively. Six alleles of the 18 originated from tolerant pool were significantly up-regulated under waterlogging, but not those from sensitive pool. Importantly, one allele (GRMZM2G055704) of the six genes was mapped between umc1619 and umc1948 on chromosome 1 where a QTL associated with waterlogging tolerance was identified in a previous research, strongly indicating that GRMZM2G055704 is a candidate gene responsive to waterlogging. Our research contributes to the knowledge of the molecular mechanism for waterlogging tolerance in maize." @default.
• W2620606831 created "2017-06-09" @default.
• W2620606831 creator A5001739027 @default.
• W2620606831 creator A5014610763 @default.
• W2620606831 creator A5017581825 @default.
• W2620606831 creator A5018525900 @default.
• W2620606831 creator A5043970465 @default.
• W2620606831 creator A5055864222 @default.
• W2620606831 creator A5080938108 @default.
• W2620606831 creator A5081754547 @default.
• W2620606831 creator A5087739295 @default.
• W2620606831 creator A5088340228 @default.
• W2620606831 creator A5089051100 @default.
• W2620606831 date "2017-06-14" @default.
• W2620606831 modified "2023-10-06" @default.
• W2620606831 title "Bulked Segregant RNA-seq Reveals Differential Expression and SNPs of Candidate Genes Associated with Waterlogging Tolerance in Maize" @default.
• W2620606831 cites W1859427385 @default.
• W2620606831 cites W1987492511 @default.
• W2620606831 cites W1992501760 @default.
• W2620606831 cites W1999102617 @default.
• W2620606831 cites W2016833403 @default.
• W2620606831 cites W2018395736 @default.
• W2620606831 cites W2033524318 @default.
• W2620606831 cites W2033810712 @default.
• W2620606831 cites W2049836619 @default.
• W2620606831 cites W2051500063 @default.
• W2620606831 cites W2055501598 @default.
• W2620606831 cites W2057095550 @default.
• W2620606831 cites W2063695918 @default.
• W2620606831 cites W2072715465 @default.
• W2620606831 cites W2081917088 @default.
• W2620606831 cites W2082591305 @default.
• W2620606831 cites W2091783428 @default.
• W2620606831 cites W2094352562 @default.
• W2620606831 cites W2102823823 @default.
• W2620606831 cites W2108146053 @default.
• W2620606831 cites W2108539228 @default.
• W2620606831 cites W2108819945 @default.
• W2620606831 cites W2111191974 @default.
• W2620606831 cites W2112113834 @default.
• W2620606831 cites W2117608012 @default.
• W2620606831 cites W2119180969 @default.
• W2620606831 cites W2122215283 @default.
• W2620606831 cites W2124257486 @default.
• W2620606831 cites W2138920781 @default.
• W2620606831 cites W2146516445 @default.
• W2620606831 cites W2158018108 @default.
• W2620606831 cites W2161955238 @default.
• W2620606831 cites W2165333214 @default.
• W2620606831 cites W2258185033 @default.
• W2620606831 cites W2313533128 @default.
• W2620606831 doi "https://doi.org/10.3389/fpls.2017.01022" @default.
• W2620606831 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/5470080" @default.
• W2620606831 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/28659961" @default.
• W2620606831 hasPublicationYear "2017" @default.
• W2620606831 type Work @default.
• W2620606831 sameAs 2620606831 @default.
• W2620606831 citedByCount "44" @default.
• W2620606831 countsByYear W26206068312018 @default.
• W2620606831 countsByYear W26206068312019 @default.
• W2620606831 countsByYear W26206068312020 @default.
• W2620606831 countsByYear W26206068312021 @default.
• W2620606831 countsByYear W26206068312022 @default.
• W2620606831 countsByYear W26206068312023 @default.
• W2620606831 crossrefType "journal-article" @default.
• W2620606831 hasAuthorship W2620606831A5001739027 @default.
• W2620606831 hasAuthorship W2620606831A5014610763 @default.
• W2620606831 hasAuthorship W2620606831A5017581825 @default.
• W2620606831 hasAuthorship W2620606831A5018525900 @default.
• W2620606831 hasAuthorship W2620606831A5043970465 @default.
• W2620606831 hasAuthorship W2620606831A5055864222 @default.
• W2620606831 hasAuthorship W2620606831A5080938108 @default.
• W2620606831 hasAuthorship W2620606831A5081754547 @default.
• W2620606831 hasAuthorship W2620606831A5087739295 @default.
• W2620606831 hasAuthorship W2620606831A5088340228 @default.
• W2620606831 hasAuthorship W2620606831A5089051100 @default.
• W2620606831 hasBestOaLocation W26206068311 @default.
• W2620606831 hasConcept C104317684 @default.
• W2620606831 hasConcept C107397762 @default.
• W2620606831 hasConcept C122735190 @default.
• W2620606831 hasConcept C135763542 @default.
• W2620606831 hasConcept C150194340 @default.
• W2620606831 hasConcept C153209595 @default.
• W2620606831 hasConcept C162317418 @default.
• W2620606831 hasConcept C18903297 @default.
• W2620606831 hasConcept C202583358 @default.
• W2620606831 hasConcept C2780229518 @default.
• W2620606831 hasConcept C30481170 @default.
• W2620606831 hasConcept C54355233 @default.
• W2620606831 hasConcept C67715294 @default.
• W2620606831 hasConcept C69991583 @default.
• W2620606831 hasConcept C76725341 @default.
• W2620606831 hasConcept C81941488 @default.
• W2620606831 hasConcept C86803240 @default.
• W2620606831 hasConceptScore W2620606831C104317684 @default.
• W2620606831 hasConceptScore W2620606831C107397762 @default.
• W2620606831 hasConceptScore W2620606831C122735190 @default.
• W2620606831 hasConceptScore W2620606831C135763542 @default.
• W2620606831 hasConceptScore W2620606831C150194340 @default.
• W2620606831 hasConceptScore W2620606831C153209595 @default.

• next