Matches in SemOpenAlex for { <https://semopenalex.org/work/W2623481415> ?p ?o ?g. }
Showing items 1 to 71 of
71
with 100 items per page.
- W2623481415 abstract "Plant development is controlled by transcription factors (TFs) which form complex gene-regulatory networks. Genome-wide TF DNA-binding studies revealed that these TFs have several thousands of binding sites in the Arabidopsis genome, and may regulate the expression of many genes directly. Given the importance of natural variation in plant developmental programs, there is a need to understand the molecular basis of this variation at the level of developmental gene regulation. However, until now, the evolutionary turnover and dynamics of TF binding sites among plant species has not yet experimentally determined. Here, we performed comparative ChIP-seq studies of the MADS-box TF SEPALLATA3 (SEP3) in inflorescences of two Arabidopsis species: A. thaliana and A. lyrata. Comparative RNA-seq analysis shows that the loss/gain of BSs is often followed by a change in gene expression. Chromatin was crosslinked and isolated from wildtype A. lyrata inflorescences up to floral stage 10/11. The immunoprecipitation of protein-DNA complexes was performed using a peptide SEP3 antibody that was raised against A. thaliana SEP3, and is also able to recognize the homolog from A. lyrata due to protein similarity. As a control, de-crosslinked 'input-DNA' was used. SEP3 ChIP-seq on Arabidopsis thaliana can be found in the accessions GSM364939 and GSM364941. Re-analyzed peak positions for these samples are included as a supplementary file on the series level (SEP3Ratiobg5@TAIR10-win.csv)." @default.
- W2623481415 created "2017-06-15" @default.
- W2623481415 creator A5009628707 @default.
- W2623481415 creator A5013607769 @default.
- W2623481415 creator A5042581802 @default.
- W2623481415 creator A5057752760 @default.
- W2623481415 creator A5081125994 @default.
- W2623481415 date "2015-01-01" @default.
- W2623481415 modified "2023-09-24" @default.
- W2623481415 title "Evolutionary dynamics of DNA-binding sites and direct target genes of a floral master regulatory transcription factor [ChIP-Seq]" @default.
- W2623481415 hasPublicationYear "2015" @default.
- W2623481415 type Work @default.
- W2623481415 sameAs 2623481415 @default.
- W2623481415 citedByCount "0" @default.
- W2623481415 crossrefType "journal-article" @default.
- W2623481415 hasAuthorship W2623481415A5009628707 @default.
- W2623481415 hasAuthorship W2623481415A5013607769 @default.
- W2623481415 hasAuthorship W2623481415A5042581802 @default.
- W2623481415 hasAuthorship W2623481415A5057752760 @default.
- W2623481415 hasAuthorship W2623481415A5081125994 @default.
- W2623481415 hasConcept C101762097 @default.
- W2623481415 hasConcept C104317684 @default.
- W2623481415 hasConcept C134320426 @default.
- W2623481415 hasConcept C143065580 @default.
- W2623481415 hasConcept C150194340 @default.
- W2623481415 hasConcept C160956161 @default.
- W2623481415 hasConcept C2775988993 @default.
- W2623481415 hasConcept C2779491563 @default.
- W2623481415 hasConcept C54355233 @default.
- W2623481415 hasConcept C70721500 @default.
- W2623481415 hasConcept C86339819 @default.
- W2623481415 hasConcept C86803240 @default.
- W2623481415 hasConceptScore W2623481415C101762097 @default.
- W2623481415 hasConceptScore W2623481415C104317684 @default.
- W2623481415 hasConceptScore W2623481415C134320426 @default.
- W2623481415 hasConceptScore W2623481415C143065580 @default.
- W2623481415 hasConceptScore W2623481415C150194340 @default.
- W2623481415 hasConceptScore W2623481415C160956161 @default.
- W2623481415 hasConceptScore W2623481415C2775988993 @default.
- W2623481415 hasConceptScore W2623481415C2779491563 @default.
- W2623481415 hasConceptScore W2623481415C54355233 @default.
- W2623481415 hasConceptScore W2623481415C70721500 @default.
- W2623481415 hasConceptScore W2623481415C86339819 @default.
- W2623481415 hasConceptScore W2623481415C86803240 @default.
- W2623481415 hasLocation W26234814151 @default.
- W2623481415 hasOpenAccess W2623481415 @default.
- W2623481415 hasPrimaryLocation W26234814151 @default.
- W2623481415 hasRelatedWork W1898840110 @default.
- W2623481415 hasRelatedWork W2002735806 @default.
- W2623481415 hasRelatedWork W2025381744 @default.
- W2623481415 hasRelatedWork W2029633106 @default.
- W2623481415 hasRelatedWork W2057706609 @default.
- W2623481415 hasRelatedWork W2095821078 @default.
- W2623481415 hasRelatedWork W2131307111 @default.
- W2623481415 hasRelatedWork W2146388983 @default.
- W2623481415 hasRelatedWork W2150327966 @default.
- W2623481415 hasRelatedWork W2156150736 @default.
- W2623481415 hasRelatedWork W2158323223 @default.
- W2623481415 hasRelatedWork W2161539176 @default.
- W2623481415 hasRelatedWork W2164820209 @default.
- W2623481415 hasRelatedWork W2169916248 @default.
- W2623481415 hasRelatedWork W2409781001 @default.
- W2623481415 hasRelatedWork W2774636275 @default.
- W2623481415 hasRelatedWork W2811204972 @default.
- W2623481415 hasRelatedWork W2953029749 @default.
- W2623481415 hasRelatedWork W3196772404 @default.
- W2623481415 hasRelatedWork W2136639752 @default.
- W2623481415 isParatext "false" @default.
- W2623481415 isRetracted "false" @default.
- W2623481415 magId "2623481415" @default.
- W2623481415 workType "article" @default.