FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W2748061811> ?p ?o ?g. }

• W2748061811 abstract "Transposable elements (TEs) are highly abundant genomic parasites in eukaryote genomes. Although several genomes have been screened for TEs, so far very limited information is available regarding avian TEs and their evolutionary histories. Taking advantage of the rich genomic data available for birds, we characterized the evolutionary history of the galluhop element, originally described in Gallus gallus, through the use of several bioinformatic analyses.galluhop homologous sequences were found in 6 of 72 genomes analyzed: 5 species of Galliformes (Gallus gallus, Meleagris gallopavo, Coturnix japonica, Colinus virginianus, Lyrurus tetrix) and one Buceritiformes (Buceros rhinoceros). The copy number ranged from 5 to 10,158, in the genomes of C. japonica and G. gallus respectively. All 6 species possessed short elements, suggesting the presence of Miniature Inverted repeats Transposable Elements (MITEs), which underwent an ancient massive amplification in the G. gallus and M. gallopavo genomes. Only 4 species showed potential MITE full-length partners, although no potential coding copies were detected. Phylogenetic analysis of reconstructed coding sequences showed that galluhop homolog sequences form a new mariner subfamily, which we termed Gallus. Inter-species and intragenomic galluhop distance analyses indicated a high identity between the consensus of B. rhinoceros and the other 5 related species, and different emergence ages of the element between the Galliformes species and B. rhinocerus, suggesting that horizontal transfer took place from Galliformes to a Buceritiformes ancestor, probably through an intermediate species.Overall, our results showed that mariner elements have amplified to high copy numbers in some avian species, and that this transposition burst probably occurred in the common ancestor of G. gallus and M. gallopavo. In addition, although no coding sequences could be found currently, they probably existed, allowing an ancient massive MITE amplification in these 2 species. The other 4 species also have MITEs, suggesting that this new mariner family is prone to give rise to such non-autonomous derivatives. Last, our results suggest that a horizontal transfer event of a galluhop element occurred between Galliformes and Buceritiformes." @default.
• W2748061811 created "2017-08-31" @default.
• W2748061811 creator A5000742304 @default.
• W2748061811 creator A5013497150 @default.
• W2748061811 creator A5037130589 @default.
• W2748061811 creator A5049356853 @default.
• W2748061811 creator A5078573575 @default.
• W2748061811 date "2017-08-14" @default.
• W2748061811 modified "2023-10-15" @default.
• W2748061811 title "Evolutionary history of the mariner element galluhop in avian genomes" @default.
• W2748061811 cites W134154981 @default.
• W2748061811 cites W1482190741 @default.
• W2748061811 cites W1825942364 @default.
• W2748061811 cites W1848049814 @default.
• W2748061811 cites W1903788602 @default.
• W2748061811 cites W1906262170 @default.
• W2748061811 cites W1982828686 @default.
• W2748061811 cites W1991346555 @default.
• W2748061811 cites W1999551854 @default.
• W2748061811 cites W2001671544 @default.
• W2748061811 cites W2006396039 @default.
• W2748061811 cites W2007189740 @default.
• W2748061811 cites W2013907950 @default.
• W2748061811 cites W2019436130 @default.
• W2748061811 cites W2021299885 @default.
• W2748061811 cites W2026952154 @default.
• W2748061811 cites W2042086471 @default.
• W2748061811 cites W2044880917 @default.
• W2748061811 cites W2054988931 @default.
• W2748061811 cites W2059864757 @default.
• W2748061811 cites W2071501400 @default.
• W2748061811 cites W2079933828 @default.
• W2748061811 cites W2092026879 @default.
• W2748061811 cites W2098448352 @default.
• W2748061811 cites W2098466396 @default.
• W2748061811 cites W2103546861 @default.
• W2748061811 cites W2109849460 @default.
• W2748061811 cites W2117260150 @default.
• W2748061811 cites W2119837484 @default.
• W2748061811 cites W2120611661 @default.
• W2748061811 cites W2136146039 @default.
• W2748061811 cites W2139036235 @default.
• W2748061811 cites W2143450601 @default.
• W2748061811 cites W2145711243 @default.
• W2748061811 cites W2145712154 @default.
• W2748061811 cites W2152882637 @default.
• W2748061811 cites W2158266834 @default.
• W2748061811 cites W2160378127 @default.
• W2748061811 cites W2162603025 @default.
• W2748061811 cites W2163502722 @default.
• W2748061811 cites W2163663901 @default.
• W2748061811 cites W2167406239 @default.
• W2748061811 cites W2174944208 @default.
• W2748061811 cites W2256663809 @default.
• W2748061811 cites W2256784497 @default.
• W2748061811 cites W2293353496 @default.
• W2748061811 cites W2336274701 @default.
• W2748061811 cites W2559011563 @default.
• W2748061811 cites W2564972022 @default.
• W2748061811 cites W2606371917 @default.
• W2748061811 cites W4230096730 @default.
• W2748061811 cites W4243739545 @default.
• W2748061811 cites W4292239814 @default.
• W2748061811 doi "https://doi.org/10.1186/s13100-017-0094-z" @default.
• W2748061811 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/5556988" @default.
• W2748061811 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/28814978" @default.
• W2748061811 hasPublicationYear "2017" @default.
• W2748061811 type Work @default.
• W2748061811 sameAs 2748061811 @default.
• W2748061811 citedByCount "3" @default.
• W2748061811 countsByYear W27480618112018 @default.
• W2748061811 countsByYear W27480618112019 @default.
• W2748061811 countsByYear W27480618112020 @default.
• W2748061811 crossrefType "journal-article" @default.
• W2748061811 hasAuthorship W2748061811A5000742304 @default.
• W2748061811 hasAuthorship W2748061811A5013497150 @default.
• W2748061811 hasAuthorship W2748061811A5037130589 @default.
• W2748061811 hasAuthorship W2748061811A5049356853 @default.
• W2748061811 hasAuthorship W2748061811A5078573575 @default.
• W2748061811 hasBestOaLocation W27480618111 @default.
• W2748061811 hasConcept C104317684 @default.
• W2748061811 hasConcept C141231307 @default.
• W2748061811 hasConcept C193252679 @default.
• W2748061811 hasConcept C2780038584 @default.
• W2748061811 hasConcept C4918238 @default.
• W2748061811 hasConcept C54355233 @default.
• W2748061811 hasConcept C78458016 @default.
• W2748061811 hasConcept C86803240 @default.
• W2748061811 hasConcept C90132467 @default.
• W2748061811 hasConcept C90856448 @default.
• W2748061811 hasConceptScore W2748061811C104317684 @default.
• W2748061811 hasConceptScore W2748061811C141231307 @default.
• W2748061811 hasConceptScore W2748061811C193252679 @default.
• W2748061811 hasConceptScore W2748061811C2780038584 @default.
• W2748061811 hasConceptScore W2748061811C4918238 @default.
• W2748061811 hasConceptScore W2748061811C54355233 @default.
• W2748061811 hasConceptScore W2748061811C78458016 @default.
• W2748061811 hasConceptScore W2748061811C86803240 @default.
• W2748061811 hasConceptScore W2748061811C90132467 @default.
• W2748061811 hasConceptScore W2748061811C90856448 @default.

• next