Matches in SemOpenAlex for { <https://semopenalex.org/work/W2766564105> ?p ?o ?g. }
- W2766564105 endingPage "328" @default.
- W2766564105 startingPage "307" @default.
- W2766564105 abstract "The plastome of Linum usitatissimum was completely sequenced allowing analyses of evolution of genome structure, RNA editing sites, molecular markers, and indicating the position of Linaceae within Malpighiales. Flax (Linum usitatissimum L.) is an economically important crop used as food, feed, and industrial feedstock. It belongs to the Linaceae family, which is noted by high morphological and ecological diversity. Here, we reported the complete sequence of flax plastome, the first species within Linaceae family to have the plastome sequenced, assembled and characterized in detail. The plastome of flax is a circular DNA molecule of 156,721 bp with a typical quadripartite structure including two IRs of 31,990 bp separating the LSC of 81,767 bp and the SSC of 10,974 bp. It shows two expansion events from IRB to LSC and from IRB to SSC, and a contraction event in the IRA-LSC junction, which changed significantly the size and the gene content of LSC, SSC and IRs. We identified 109 unique genes and 2 pseudogenes (rpl23 and ndhF). The plastome lost the conserved introns of clpP gene and the complete sequence of rps16 gene. The clpP, ycf1, and ycf2 genes show high nucleotide and aminoacid divergence, but they still possibly retain the functionality. Moreover, we also identified 176 SSRs, 20 tandem repeats, and 39 dispersed repeats. We predicted in 18 genes a total of 53 RNA editing sites of which 32 were not found before in other species. The phylogenetic inference based on 63 plastid protein-coding genes of 38 taxa supports three major clades within Malpighiales order. One of these clades has flax (Linaceae) sister to Chrysobalanaceae family, differing from earlier studies that included Linaceae into the euphorbioid clade." @default.
- W2766564105 created "2017-11-10" @default.
- W2766564105 creator A5006390885 @default.
- W2766564105 creator A5011073803 @default.
- W2766564105 creator A5017332938 @default.
- W2766564105 creator A5022348508 @default.
- W2766564105 creator A5053013984 @default.
- W2766564105 creator A5072331902 @default.
- W2766564105 creator A5074445223 @default.
- W2766564105 creator A5085694024 @default.
- W2766564105 creator A5090509293 @default.
- W2766564105 date "2017-10-30" @default.
- W2766564105 modified "2023-09-25" @default.
- W2766564105 title "The Linum usitatissimum L. plastome reveals atypical structural evolution, new editing sites, and the phylogenetic position of Linaceae within Malpighiales" @default.
- W2766564105 cites W10475909 @default.
- W2766564105 cites W105726557 @default.
- W2766564105 cites W1568479515 @default.
- W2766564105 cites W1571424950 @default.
- W2766564105 cites W1589850269 @default.
- W2766564105 cites W1608335176 @default.
- W2766564105 cites W1841442007 @default.
- W2766564105 cites W1969863709 @default.
- W2766564105 cites W1978907443 @default.
- W2766564105 cites W1981513721 @default.
- W2766564105 cites W1982395937 @default.
- W2766564105 cites W1982520271 @default.
- W2766564105 cites W1985640146 @default.
- W2766564105 cites W1987885743 @default.
- W2766564105 cites W1991330646 @default.
- W2766564105 cites W1992840604 @default.
- W2766564105 cites W1996973581 @default.
- W2766564105 cites W1999039602 @default.
- W2766564105 cites W2000647068 @default.
- W2766564105 cites W2003674398 @default.
- W2766564105 cites W2005274174 @default.
- W2766564105 cites W2005439806 @default.
- W2766564105 cites W2012343942 @default.
- W2766564105 cites W2016437536 @default.
- W2766564105 cites W2016893340 @default.
- W2766564105 cites W2017765020 @default.
- W2766564105 cites W2017920033 @default.
- W2766564105 cites W2019036532 @default.
- W2766564105 cites W2022934277 @default.
- W2766564105 cites W2024584192 @default.
- W2766564105 cites W2024979862 @default.
- W2766564105 cites W2026905804 @default.
- W2766564105 cites W2034918410 @default.
- W2766564105 cites W2036406097 @default.
- W2766564105 cites W2039972386 @default.
- W2766564105 cites W2043775744 @default.
- W2766564105 cites W2045992300 @default.
- W2766564105 cites W2049584642 @default.
- W2766564105 cites W2049991017 @default.
- W2766564105 cites W2051077808 @default.
- W2766564105 cites W2051150282 @default.
- W2766564105 cites W2051370332 @default.
- W2766564105 cites W2055028397 @default.
- W2766564105 cites W2060093183 @default.
- W2766564105 cites W2060724693 @default.
- W2766564105 cites W2060970547 @default.
- W2766564105 cites W2063421731 @default.
- W2766564105 cites W2065161588 @default.
- W2766564105 cites W2067535938 @default.
- W2766564105 cites W2068823812 @default.
- W2766564105 cites W2071465421 @default.
- W2766564105 cites W2072147123 @default.
- W2766564105 cites W2072256827 @default.
- W2766564105 cites W2079807534 @default.
- W2766564105 cites W2083157660 @default.
- W2766564105 cites W2085632916 @default.
- W2766564105 cites W2086000395 @default.
- W2766564105 cites W2087360477 @default.
- W2766564105 cites W2093636541 @default.
- W2766564105 cites W2095677072 @default.
- W2766564105 cites W2098737285 @default.
- W2766564105 cites W2099388167 @default.
- W2766564105 cites W2100998790 @default.
- W2766564105 cites W2101392937 @default.
- W2766564105 cites W2101405811 @default.
- W2766564105 cites W2106535769 @default.
- W2766564105 cites W2106896768 @default.
- W2766564105 cites W2107282968 @default.
- W2766564105 cites W2109964522 @default.
- W2766564105 cites W2112814753 @default.
- W2766564105 cites W2114671632 @default.
- W2766564105 cites W2115227516 @default.
- W2766564105 cites W2116112403 @default.
- W2766564105 cites W2122490658 @default.
- W2766564105 cites W2124281279 @default.
- W2766564105 cites W2125551166 @default.
- W2766564105 cites W2126275208 @default.
- W2766564105 cites W2129071690 @default.
- W2766564105 cites W2130441475 @default.
- W2766564105 cites W2131473084 @default.
- W2766564105 cites W2132926880 @default.
- W2766564105 cites W2133870991 @default.
- W2766564105 cites W2135889068 @default.
- W2766564105 cites W2136846721 @default.