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• W2766745791 abstract "Many studies have shown that protonated nucleic acid base pairs are involved in a wide variety of nucleic acid structures. However, little information is available on relative stability of hemiprotonated self- and non-self-dimers at monomer level. We used electrospray ionization mass spectrometry (ESI-MS) to evaluate the relative stability under various concentrations of hydrogen ion. These enable conjecture of the formation of protonated non-Watson-Crick base pairs based on DNA and RNA base sequence. In the present study, we observed that ESI-MS peaks corresponded to respective self-dimers for all examined nucleosides except for adenosine. Peak heights depended on the concentration of hydrogen ion. The ESI-MS peak heights of the hemiprotonated cytidine dimers and the hemiprotonated thymidine dimer sharply increased with increased concentration of hydrogen ion, suggesting direct participation of hydrogen ion in dimer formations. In ESI-MS measurements of the solutions containing adenosine, cytidine, thymidine and guanosine, we observed protonated cytidine-guanosine dimer (CH+-G) and protonated cytidine-thymidine dimer (CH+-T) in addition to hemiprotonated cytidine-cytidine dimer (CH+-C) with following relative peak height, (CH+-C) > (CH+-G) ≈ (CH+-T) > (CH+-A). Additionally, in the ESI-MS measurements of solutions containing adenosine, thymidine and guanosine, we observed a considerable amount of protonated adenosine-guanosine (AH+-G) and protonated adenosine-thymidine (AH+-T)." @default.
• W2766745791 created "2017-11-10" @default.
• W2766745791 creator A5005966243 @default.
• W2766745791 creator A5068579742 @default.
• W2766745791 date "2017-10-26" @default.
• W2766745791 modified "2023-09-23" @default.
• W2766745791 title "Detection of protonated non-Watson–Crick base pairs using electrospray ionization mass spectrometry" @default.
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• W2766745791 doi "https://doi.org/10.1093/jb/mvx073" @default.
• W2766745791 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/29087477" @default.
• W2766745791 hasPublicationYear "2017" @default.
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