FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W2788407837> ?p ?o ?g. }

• W2788407837 endingPage "185" @default.
• W2788407837 startingPage "185" @default.
• W2788407837 abstract "Closely related to the model plant Arabidopsis thaliana, the genus Boechera is known to contain both sexual and apomictic species or accessions. Boechera retrofracta is a diploid sexually reproducing species and is thought to be an ancestral parent species of apomictic species. Here we report the de novo assembly of the B. retrofracta genome using short Illumina and Roche reads from 1 paired-end and 3 mate pair libraries. The distribution of 23-mers from the paired end library has indicated a low level of heterozygosity and the presence of detectable duplications and triplications. The genome size was estimated to be equal 227 Mb. N50 of the assembled scaffolds was 2.3 Mb. Using a hybrid approach that combines homology-based and de novo methods 27,048 protein-coding genes were predicted. Also repeats, transfer RNA (tRNA) and ribosomal RNA (rRNA) genes were annotated. Finally, genes of B. retrofracta and 6 other Brassicaceae species were used for phylogenetic tree reconstruction. In addition, we explored the histidine exonuclease APOLLO locus, related to apomixis in Boechera, and proposed model of its evolution through the series of duplications. An assembled genome of B. retrofracta will help in the challenging assembly of the highly heterozygous genomes of hybrid apomictic species." @default.
• W2788407837 created "2018-03-06" @default.
• W2788407837 creator A5026090997 @default.
• W2788407837 creator A5029734164 @default.
• W2788407837 creator A5031802772 @default.
• W2788407837 creator A5042714049 @default.
• W2788407837 creator A5058494554 @default.
• W2788407837 creator A5061196120 @default.
• W2788407837 creator A5064902636 @default.
• W2788407837 creator A5065862017 @default.
• W2788407837 creator A5067095002 @default.
• W2788407837 creator A5068564092 @default.
• W2788407837 creator A5072912176 @default.
• W2788407837 creator A5077991067 @default.
• W2788407837 creator A5080504817 @default.
• W2788407837 creator A5081290721 @default.
• W2788407837 date "2018-03-28" @default.
• W2788407837 modified "2023-10-18" @default.
• W2788407837 title "Assembly of the Boechera retrofracta Genome and Evolutionary Analysis of Apomixis-Associated Genes" @default.
• W2788407837 cites W128985141 @default.
• W2788407837 cites W1482190741 @default.
• W2788407837 cites W1577229195 @default.
• W2788407837 cites W1585774906 @default.
• W2788407837 cites W1767772592 @default.
• W2788407837 cites W1919257374 @default.
• W2788407837 cites W1991549814 @default.
• W2788407837 cites W1991805581 @default.
• W2788407837 cites W1996700726 @default.
• W2788407837 cites W2004588315 @default.
• W2788407837 cites W2009710835 @default.
• W2788407837 cites W2020256184 @default.
• W2788407837 cites W2055043387 @default.
• W2788407837 cites W2067026013 @default.
• W2788407837 cites W2069458148 @default.
• W2788407837 cites W2101786683 @default.
• W2788407837 cites W2102619694 @default.
• W2788407837 cites W2103441770 @default.
• W2788407837 cites W2107343573 @default.
• W2788407837 cites W2112814753 @default.
• W2788407837 cites W2128398228 @default.
• W2788407837 cites W2129744420 @default.
• W2788407837 cites W2129933858 @default.
• W2788407837 cites W2131031912 @default.
• W2788407837 cites W2131271579 @default.
• W2788407837 cites W2133812756 @default.
• W2788407837 cites W2134604991 @default.
• W2788407837 cites W2141052558 @default.
• W2788407837 cites W2142613131 @default.
• W2788407837 cites W2144775551 @default.
• W2788407837 cites W2145400179 @default.
• W2788407837 cites W2149494033 @default.
• W2788407837 cites W2155628349 @default.
• W2788407837 cites W2156067749 @default.
• W2788407837 cites W2158628961 @default.
• W2788407837 cites W2158804744 @default.
• W2788407837 cites W2159957100 @default.
• W2788407837 cites W2160378127 @default.
• W2788407837 cites W2165011900 @default.
• W2788407837 cites W2166825456 @default.
• W2788407837 cites W2217669920 @default.
• W2788407837 cites W2223752691 @default.
• W2788407837 cites W2311203695 @default.
• W2788407837 cites W2570669030 @default.
• W2788407837 cites W2605108192 @default.
• W2788407837 cites W2755792415 @default.
• W2788407837 cites W4210400672 @default.
• W2788407837 cites W4210702584 @default.
• W2788407837 cites W4250052351 @default.
• W2788407837 doi "https://doi.org/10.3390/genes9040185" @default.
• W2788407837 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/5924527" @default.
• W2788407837 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/29597328" @default.
• W2788407837 hasPublicationYear "2018" @default.
• W2788407837 type Work @default.
• W2788407837 sameAs 2788407837 @default.
• W2788407837 citedByCount "17" @default.
• W2788407837 countsByYear W27884078372018 @default.
• W2788407837 countsByYear W27884078372019 @default.
• W2788407837 countsByYear W27884078372020 @default.
• W2788407837 countsByYear W27884078372021 @default.
• W2788407837 countsByYear W27884078372022 @default.
• W2788407837 countsByYear W27884078372023 @default.
• W2788407837 crossrefType "journal-article" @default.
• W2788407837 hasAuthorship W2788407837A5026090997 @default.
• W2788407837 hasAuthorship W2788407837A5029734164 @default.
• W2788407837 hasAuthorship W2788407837A5031802772 @default.
• W2788407837 hasAuthorship W2788407837A5042714049 @default.
• W2788407837 hasAuthorship W2788407837A5058494554 @default.
• W2788407837 hasAuthorship W2788407837A5061196120 @default.
• W2788407837 hasAuthorship W2788407837A5064902636 @default.
• W2788407837 hasAuthorship W2788407837A5065862017 @default.
• W2788407837 hasAuthorship W2788407837A5067095002 @default.
• W2788407837 hasAuthorship W2788407837A5068564092 @default.
• W2788407837 hasAuthorship W2788407837A5072912176 @default.
• W2788407837 hasAuthorship W2788407837A5077991067 @default.
• W2788407837 hasAuthorship W2788407837A5080504817 @default.
• W2788407837 hasAuthorship W2788407837A5081290721 @default.
• W2788407837 hasBestOaLocation W27884078371 @default.
• W2788407837 hasConcept C104317684 @default.

• next